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OR_11072017_0_5m_0_2um_Micrococcales_64_4

In projects: OR_11072017_0_5m_0_2um  |  mine_tailing_impoundment_time_series

Consensus taxonomy: Micrococcales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: OR_11072017_0_5m_0_2um_UNK

Properties

Avg. coverage: 3.90 Longest contig: 16.39 Kbp Bin length: 1.58 Mbp GC content: 64.29 %
Contigs count: 738 Features count: 2217 rRNAs count: 0 tRNAs count: 14

Genome completeness

near complete RP 42 / 55 BSCG 43 / 51 MC: 2 ASCG 6 / 38
Displaying items 1-50 of 738 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
OR_11072017_0_5m_0_2um_scaffold_3996
Species: Leifsonia rubra (50%)
2 1556 bp 63.43 3.47 99.87
OR_11072017_0_5m_0_2um_scaffold_3986
Species: marine actinobacterium PHSC20C1 (50%)
2 1561 bp 65.02 4.52 94.36
OR_11072017_0_5m_0_2um_scaffold_3962
Species: marine actinobacterium PHSC20C1 (50%)
2 1568 bp 60.84 3.64 99.68
OR_11072017_0_5m_0_2um_scaffold_3960
Species: Arthrobacter aurescens (50%)
2 1570 bp 65.29 2.77 76.43
OR_11072017_0_5m_0_2um_scaffold_3940
Species: Leifsonia rubra (50%)
2 1576 bp 63.32 3.90 94.61
OR_11072017_0_5m_0_2um_scaffold_3934
Class: Actinobacteria (66.67%)
3 1580 bp 66.33 3.80 62.09
OR_11072017_0_5m_0_2um_scaffold_3913
Species: marine actinobacterium PHSC20C1 (50%)
2 1587 bp 64.97 2.93 90.55
OR_11072017_0_5m_0_2um_scaffold_3905
Species: Cryobacterium roopkundense (50%)
2 1590 bp 65.72 3.96 99.25
OR_11072017_0_5m_0_2um_scaffold_3882
Species: marine actinobacterium PHSC20C1 (50%)
2 1599 bp 63.73 3.85 99.62
OR_11072017_0_5m_0_2um_scaffold_3879
Species: marine actinobacterium PHSC20C1 (50%)
2 1600 bp 65.81 4.03 88.69
OR_11072017_0_5m_0_2um_scaffold_3858
Species: Janibacter sp. HTCC2649 (50%)
2 1607 bp 63.53 2.99 91.29
OR_11072017_0_5m_0_2um_scaffold_3853
Species: marine actinobacterium PHSC20C1 (50%)
2 1608 bp 60.45 3.82 101.49
OR_11072017_0_5m_0_2um_scaffold_3848
Order: Micrococcales (50%)
4 1610 bp 64.72 2.98 89.25
OR_11072017_0_5m_0_2um_scaffold_3845
Order: Micrococcales (66.67%)
3 1612 bp 67.12 3.82 92.87
OR_11072017_0_5m_0_2um_scaffold_3839
Order: Micrococcales (100%)
3 1614 bp 62.58 2.70 79.93
OR_11072017_0_5m_0_2um_scaffold_3836
Genus: Leifsonia (66.67%)
3 1615 bp 63.96 2.60 73.93
OR_11072017_0_5m_0_2um_scaffold_3832
Species: marine actinobacterium PHSC20C1 (50%)
2 1616 bp 66.34 3.81 80.20
OR_11072017_0_5m_0_2um_scaffold_3829
Order: Micrococcales (66.67%)
3 1617 bp 64.13 3.90 94.62
OR_11072017_0_5m_0_2um_scaffold_3800
Species: Leifsonia xyli (50%)
2 1625 bp 60.06 2.95 95.82
OR_11072017_0_5m_0_2um_scaffold_3784
Species: Rhodococcus ruber (50%)
2 1629 bp 62.25 6.54 95.40
OR_11072017_0_5m_0_2um_scaffold_3774
Order: Micrococcales (100%)
3 1632 bp 62.56 3.58 98.90
OR_11072017_0_5m_0_2um_scaffold_3760
Species: marine actinobacterium PHSC20C1 (66.67%)
3 1638 bp 67.64 3.02 89.93
OR_11072017_0_5m_0_2um_scaffold_3743
Species: marine actinobacterium PHSC20C1 (50%)
2 1643 bp 65.06 4.11 102.25
OR_11072017_0_5m_0_2um_scaffold_3714
Order: Micrococcales (100%)
3 1654 bp 67.71 4.44 70.56
OR_11072017_0_5m_0_2um_scaffold_3712
Species: Arthrobacter globiformis (100%)
1 1656 bp 60.69 8.70 69.93
OR_11072017_0_5m_0_2um_scaffold_3707
Order: Micrococcales (66.67%)
3 1659 bp 66.06 2.89 89.87
OR_11072017_0_5m_0_2um_scaffold_3687
Species: Microbacterium ginsengisoli (50%)
2 1667 bp 70.73 4.32 96.28
OR_11072017_0_5m_0_2um_scaffold_3671
Species: Cryobacterium sp. MLB-32 (50%)
4 1675 bp 62.21 6.54 87.94
OR_11072017_0_5m_0_2um_scaffold_3669
Order: Micrococcales (66.67%)
3 1676 bp 65.27 3.67 90.93
OR_11072017_0_5m_0_2um_scaffold_3668
Species: marine actinobacterium PHSC20C1 (50%)
2 1676 bp 64.80 3.76 83.59
OR_11072017_0_5m_0_2um_scaffold_3659
Species: marine actinobacterium PHSC20C1 (100%)
2 1682 bp 63.14 4.28 86.50
OR_11072017_0_5m_0_2um_scaffold_3658
Species: marine actinobacterium PHSC20C1 (50%)
2 1682 bp 62.78 3.75 78.30
OR_11072017_0_5m_0_2um_scaffold_3644
Species: Leifsonia rubra (50%)
2 1688 bp 61.14 3.47 97.22
OR_11072017_0_5m_0_2um_scaffold_3633
Species: Leifsonia rubra (100%)
2 1692 bp 65.01 5.59 100.00
OR_11072017_0_5m_0_2um_scaffold_3631
Order: Micrococcales (66.67%)
3 1694 bp 66.12 2.39 95.10
OR_11072017_0_5m_0_2um_scaffold_3627
Species: Arthrobacter sp. PAMC25486 (50%)
2 1695 bp 68.79 3.81 93.81
OR_11072017_0_5m_0_2um_scaffold_3626
Species: Clavibacter michiganensis (50%)
2 1695 bp 65.25 3.98 96.99
OR_11072017_0_5m_0_2um_scaffold_3625
Species: Nocardia asteroides (50%)
2 1695 bp 63.89 4.60 95.40
OR_11072017_0_5m_0_2um_scaffold_3624
Species: Cryobacterium sp. MLB-32 (50%)
4 1696 bp 61.14 3.54 99.23
OR_11072017_0_5m_0_2um_scaffold_3623
Species: actinobacterium acMicro-4 (50%)
2 1696 bp 65.51 3.54 99.94
OR_11072017_0_5m_0_2um_scaffold_3592
Order: Micrococcales (66.67%)
3 1706 bp 64.60 3.43 94.78
OR_11072017_0_5m_0_2um_scaffold_3590
Species: Cryobacterium sp. MLB-32 (50%)
2 1708 bp 64.58 4.13 95.55
OR_11072017_0_5m_0_2um_scaffold_3581
Species: Leifsonia rubra (50%)
2 1712 bp 62.50 4.29 100.41
OR_11072017_0_5m_0_2um_scaffold_3571
Species: Clavibacter michiganensis (50%)
2 1718 bp 64.90 4.19 96.22
OR_11072017_0_5m_0_2um_scaffold_3570
Order: Micrococcales (75%)
4 1718 bp 66.01 3.67 81.37
OR_11072017_0_5m_0_2um_scaffold_3569
Species: Microbacterium sp. oral taxon 186 (100%)
2 1718 bp 62.51 4.19 89.23
OR_11072017_0_5m_0_2um_scaffold_3567
Species: Agreia bicolorata (66.67%)
3 1719 bp 66.20 3.93 97.38
OR_11072017_0_5m_0_2um_scaffold_3546
Order: Micrococcales (100%)
3 1727 bp 66.53 4.86 99.54
OR_11072017_0_5m_0_2um_scaffold_3540
Species: Cryobacterium sp. MLB-32 (50%)
2 1730 bp 62.89 3.82 85.66
OR_11072017_0_5m_0_2um_scaffold_3539
Species: Arthrobacter sp. FB24 (100%)
2 1730 bp 63.18 4.42 94.51
Displaying items 1-50 of 738 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.