ggKbase home page

PLM1_100_b1_sep16_scaffold_23424_2

Organism: PLM1_100_b1_sep16_Tectomicrobia_59_7

near complete RP 44 / 55 BSCG 45 / 51 ASCG 9 / 38 MC: 1
Location: 671..1348

Top 3 Functional Annotations

Value Algorithm Source
Marine sediment metagenome DNA, contig: S01H1_S15689 {ECO:0000313|EMBL:GAG22100.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.7
  • Coverage: 169.0
  • Bit_score: 217
  • Evalue 1.20e-53
RNA polymerase, sigma-24 subunit, ECF subfamily bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis similarity UNIREF
DB: UNIREF100
  • Identity: 38.5
  • Coverage: 179.0
  • Bit_score: 101
  • Evalue 7.00e-19
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 35.3
  • Coverage: 187.0
  • Bit_score: 100
  • Evalue 5.70e-19

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

marine sediment metagenome

Sequences

DNA sequence
Length: 678
ATGGAAGAGGTTCTGGTGCAGGAGCGCCCTGTGGTGGAGCTGGAGCTAGAAGAGCGCTTCCGCCTGTTTGTGGCCTCGCATCGCGATCGCGCGCAACGCCTGGCATGGCGCCTGGTGGGGGGTGACGACGCGGCCGCAGAGGATGTGACCCAGGAAGCGTTTGTCAAGGCGTATAAGGCCCTCGGTCAATTCCGGGGGGAGGCAAGTCTCGCCACGTGGTTTTACCGGATCGTGGTCCGCCAGGCGCACCACTACTGCCGCTGGCGGACAGTGCGAGAGACCTGGGGGGCACTCTGGAACGGGACGCCCCCGCCCTCTGCAGCGCTGGGAGCCGGGGATCCACTGCTCAGGCGCCGCATCGCCGATGCGCTCGCACAGCTCAGCCGCAGCCAGAGGGAGGCGTTTGTACTAGTACACCTGGAGGGTTGCAGCGTGCGCGAGGCCGCGGCCTTGCTGGAGAAGCCGGAAGGCACAGTGAAGAGCCACCTGCACCGGGCGCTGCTGACACTCCGGAGTGAATTCGCGTCGGACGCGGCTGGCGCCTGCCCTCGTCACGGCTGCAGTGGCAGTGCTCGTCGCTTGTCTCACCTGGTCCGGCCTGTTCACGTCTCTGCCGAGGAAGGGAGGCCCGAGCCTCAGCGTGAGAGCACTGCCCAGCACCGGGCAGTGGGAGTATGA
PROTEIN sequence
Length: 226
MEEVLVQERPVVELELEERFRLFVASHRDRAQRLAWRLVGGDDAAAEDVTQEAFVKAYKALGQFRGEASLATWFYRIVVRQAHHYCRWRTVRETWGALWNGTPPPSAALGAGDPLLRRRIADALAQLSRSQREAFVLVHLEGCSVREAAALLEKPEGTVKSHLHRALLTLRSEFASDAAGACPRHGCSGSARRLSHLVRPVHVSAEEGRPEPQRESTAQHRAVGV*