ggKbase home page

PLM1_100_b1_sep16_scaffold_2151_10

Organism: PLM1_100_b1_sep16_Deltaproteobacteria_55_10

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(8080..8436)

Top 3 Functional Annotations

Value Algorithm Source
Anti-ECFsigma factor, ChrR bin=GWD2_Deltaproteobacteria_55_8 species=Rhodospirillum photometricum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 69.5
  • Coverage: 118.0
  • Bit_score: 171
  • Evalue 3.80e-40
ChrR family transcriptional activator protein similarity KEGG
DB: KEGG
  • Identity: 34.5
  • Coverage: 110.0
  • Bit_score: 52
  • Evalue 7.20e-05
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 72.0
  • Coverage: 118.0
  • Bit_score: 184
  • Evalue 6.00e-44

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Deltaproteobacteria_60_19 → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 357
TTGCGCCGGTCGTTAAATGATTTTCTAAAAATTAGCTTGAACGCCGAGGCGTTGGATCGGCTTCAGTGGCGCGACTTCGGCAACGGTCTTTCGATGTGCCGCCTGGCTCGCGAAGGTCAACGGGAATTGGTGCTTTACCGGATCGCCGCCAATGCATCGGCTGATGCATTTTTGAGGCACGAGCATATCGGCGGCGAGTTCTATCTCGTGCTCAAAGGCAAGATCGTCGACGAGACCGGCGAGTACGAAGAAGGTGACGTGGTATTTTTGGACCCGCACTCGGTGCACACGCCGCGGGCGATCGGCGAAACGGTGGTCTTAGTATTCTGGCCGGAGGGCGTGCGCATCGTCGATTGA
PROTEIN sequence
Length: 119
LRRSLNDFLKISLNAEALDRLQWRDFGNGLSMCRLAREGQRELVLYRIAANASADAFLRHEHIGGEFYLVLKGKIVDETGEYEEGDVVFLDPHSVHTPRAIGETVVLVFWPEGVRIVD*