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PLM1_100_b1_sep16_scaffold_14008_5

Organism: PLM1_100_b1_sep16_Deltaproteobacteria_55_10

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 1658..2359

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily Tax=Nitrosospira sp. APG3 RepID=M5DPR5_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 75.3
  • Coverage: 194.0
  • Bit_score: 300
  • Evalue 8.10e-79
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KIO50376.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.3
  • Coverage: 188.0
  • Bit_score: 308
  • Evalue 7.10e-81
putative RNA polymerase ECF-type sigma factor containing TPR repeat similarity KEGG
DB: KEGG
  • Identity: 72.5
  • Coverage: 189.0
  • Bit_score: 280
  • Evalue 2.50e-73

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Taxonomy

Nitrosospira sp. NpAV → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 702
ATGGATCGCAACCCACCCGCCGACTTAACTACCGCGGCTGAACACGCGCGCCACACGGTGGACGCCGTCTACCACTCCGACTCGCGCCACGTATTCGCCACGTTAATCCGCCTGCTCGGCAACTTCGATATCGCCGAGGAGGCGCTGCACGATGCTTTCAGGGCCGCGTTGGAGCAGTGGCCGCGCGATGGCGTGCCCGCCAATCCGCGCGCCTGGCTCGTATCGACCGGGCGTTTCAAGGCCATCGACGCAATCCGCCGGCGCGCCCGATTCGAGCCGTTGCCGGACGATATCGACAAGCGACTCGTTGCTGACACCGATGATCCCGAGGCGTTGAACGACGAAAGCATCGAAGACGACCGGCTGCGCCTCATCTTCACCTGCTGCCATCCAGCCCTGTCGCCGGACGCCCAAGTGGCGATGACGCTGCGCGAAGTCTGCGGCCTCACAACCGAGGAGGTCGCGCGGGCCTTTCTCTCATCGCCGCCCACAGTGGCGCAGCGCATCGTGCGCGCCAAGGCAAAGATTCGCAACGCGCGCATTCCCTATGAGGTACCCACGGCGACCGATCTGCCGGACCGGCTCGATGCCGTGCTTCGGGTGTCTACCTCGTGTTCAACGAGGGATACTCCGCTTCATCCGGTGCAGCACTCACGCGGCACGATCTTTCAAGCGAGGCGATCAGCCTCGGTCGGCTGCTAG
PROTEIN sequence
Length: 234
MDRNPPADLTTAAEHARHTVDAVYHSDSRHVFATLIRLLGNFDIAEEALHDAFRAALEQWPRDGVPANPRAWLVSTGRFKAIDAIRRRARFEPLPDDIDKRLVADTDDPEALNDESIEDDRLRLIFTCCHPALSPDAQVAMTLREVCGLTTEEVARAFLSSPPTVAQRIVRAKAKIRNARIPYEVPTATDLPDRLDAVLRVSTSCSTRDTPLHPVQHSRGTIFQARRSASVGC*