ggKbase home page

PLM1_100_coex_sep16_scaffold_3066_7

Organism: PLM1_100_coex_sep16_Rokubacteria_71_11

near complete RP 46 / 55 MC: 2 BSCG 44 / 51 MC: 3 ASCG 10 / 38 MC: 2
Location: comp(4923..5372)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis similarity UNIREF
DB: UNIREF100
  • Identity: 64.6
  • Coverage: 130.0
  • Bit_score: 160
  • Evalue 1.10e-36
pseudouridine synthase family protein similarity KEGG
DB: KEGG
  • Identity: 49.7
  • Coverage: 147.0
  • Bit_score: 131
  • Evalue 1.20e-28
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 59.6
  • Coverage: 146.0
  • Bit_score: 161
  • Evalue 5.30e-37

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Rokubacteria_73_56 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 450
GTGACGCGCGAGCCGGGGACGCTCGCGGACCCGGCCACCGATCGAATCACCGTGGATGGGCGCGCCGTGCCGGCGCCCGAGTCCGCGCAATATCTCCTGCTGAACAAGCCGCCGGGCGTGGTCACGACGGTGCGCGATCCGGAGGGCCGGCCCGTCGTCACCGACCTGCTGCCCGCCGGCGTGCGCGAGCGCGTCTATCCGGTCGGCCGACTGGACGCCGACGTCGAGGGCGTGCTGCTGCTCACCAACGACGGCCCCCTGACCCACCGCCTGCTGCATCCGCGCTATGCGCTGCCACGCGTGTACGAGGCCGAGGTGGCGGGGCGGGTGAGCGTCGCCGACGTCCCACGCTGGGGGGAGCGGCGGTCGCTCCCCCCTGATACAAATCAATCGCTCCCCCCTGATACAAATAATTCCATTGCTTGCAGGGGTTCAACCGTCCGCCTATAA
PROTEIN sequence
Length: 150
VTREPGTLADPATDRITVDGRAVPAPESAQYLLLNKPPGVVTTVRDPEGRPVVTDLLPAGVRERVYPVGRLDADVEGVLLLTNDGPLTHRLLHPRYALPRVYEAEVAGRVSVADVPRWGERRSLPPDTNQSLPPDTNNSIACRGSTVRL*