ggKbase home page

PLM1_100_coex_sep16_scaffold_5181_2

Organism: PLM1_100_coex_sep16_Rokubacteria_71_11

near complete RP 46 / 55 MC: 2 BSCG 44 / 51 MC: 3 ASCG 10 / 38 MC: 2
Location: 1705..3426

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 similarity UNIREF
DB: UNIREF100
  • Identity: 65.4
  • Coverage: 511.0
  • Bit_score: 617
  • Evalue 9.60e-174
RpoD family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 44.8
  • Coverage: 511.0
  • Bit_score: 391
  • Evalue 3.20e-106
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 83.7
  • Coverage: 484.0
  • Bit_score: 766
  • Evalue 1.80e-218

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Rokubacteria_73_56 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 1722
ATGAGTGACGAACCGAAGCTGGAAGAGCTGGACCGACTGATCTCGGTGGGCAAGCAGAAGGGCTACCTCACCTACGACGAGGTGAACGACGCCCTCCCGTCGGACATCGTGTCCCTCGACCAACTCGACGACATCATGATGATGTTCGGATCCCTGGACATCGAGGTCGTGGACTCCGCCAAGGCCGGCCGCCTGCCCTCCGAGGTGCGCGCGGCCACGCCGGCTCCGGACGACGACGACGGCGACGGCCCCGAGCCGATCGACCTCACCCCCGGCCCGGTCGGCCGCACCGAGGACCCGGTGCGCCTCTACCTGCGCGAGATGGGCCGGGTGGCCCTGCTCACGCGCGAGGGCGAGATCGCGCTGGCCAAGCGGATCGAGGAGGGTAAGAACCAGGTCACCAACGCCATCCTCTCCACCAACCTGGCCCTCGAGCGCTTCCGCGAGCTGCGCGAGTCGCTCCGCCACGGCGACACCTCCGTCAAGGACGTCGTCGACGTCAACGAGGAGGAGTTCACCGAGGACAAGGAGGTCGCGCTCACCCGCCAGGTCGTGAACGCCTTCGGCGGCGTCGATCGGCTCCTGCGCGAGCGCGACCAGCTCCTCGACAAGGTCCGCAAGCTGCGGGCGGCGTCGGCCGGCAAGGGCCGGCGACGGGCGCGCGGCAAGGTCAAGGAGCCGGCCTGGAAGCGGCTGGAGGGTCAGGCCCAGCAGCGGCAGCAGAAGGTCCTGGAGCGGCTGCGCGCGCTGAACATCGGCAACCAGATCATCGACCGCGAGGACGGCGATCCGGCGCGCCGCGGCCTGGTGCAGCGCCTGCGCGACCTGCTCGACGACATCGAGCGCGCCGAGCGCGTGATCCAGCTGTGGACCAACGGGCGCCGGCCGTCGGCCGAGGAGGTCCAGAACCTCATCTACGTCTCCTTCCGCGACCCCGCCTCCGCCCAGGGCACCAACGGCAGCGGCGCCGCCGACCTCCACCTGCGAGCCGCCAAGAAGTTCGCGAGCCCCAAGACCCAGCAGATCTGGGTCGCCCAGCAGGAGATCAAGGCCGCCGAGGTCCGCGCCAACGCCCGCGCCGACGAGATCAAGCGCGTCATGACGATCATCAAGGAGGGCCAGCGCAAGGCGGCCATCGCCAAGAAGGAGATGGTCGAGGCCAACCTCCGGCTGGTGATCTCGATCGCGAAGAAATATACGAATCGCGGGCTACAGTTCCTCGACCTGATCCAGGAGGGGAACATCGGCCTGATGAAGGCGGTCGACAAGTTCGAGTATCGCCGGGGCTACAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCGATTACCAGAGCCATCGCGGACCAGGCCCGCACGATCCGCATCCCGGTGCACATGATCGAGACGATCAACAAGCTGATCCGCACCTCCCGCCAGCTCGTGCAGGAGCTGGGACGCGAGCCCACGCCGGAAGAGATCGCGACCAAGATGGAGTCGATCATCAGCCTGTCGTTGCGCGAGCAGACCAACAAGGTCCTCAACTCGCTGACGCCGCGCGAGGAGAAGGTGCTGCGCCTGCGCTTCGGCCTGTCCGACGGCTGCGAGCACACGCTCGAGGAGGTCGGCCAGGACTTCGCCGTGACCCGTGAGCGCATCCGGCAGATCGAGGCCAAGGCGCTGCGCAAGCTCCGTCACCCGTCCCGCTCCAAGAAGCTCCGGAGCTTCCTGGAGTCCTGA
PROTEIN sequence
Length: 574
MSDEPKLEELDRLISVGKQKGYLTYDEVNDALPSDIVSLDQLDDIMMMFGSLDIEVVDSAKAGRLPSEVRAATPAPDDDDGDGPEPIDLTPGPVGRTEDPVRLYLREMGRVALLTREGEIALAKRIEEGKNQVTNAILSTNLALERFRELRESLRHGDTSVKDVVDVNEEEFTEDKEVALTRQVVNAFGGVDRLLRERDQLLDKVRKLRAASAGKGRRRARGKVKEPAWKRLEGQAQQRQQKVLERLRALNIGNQIIDREDGDPARRGLVQRLRDLLDDIERAERVIQLWTNGRRPSAEEVQNLIYVSFRDPASAQGTNGSGAADLHLRAAKKFASPKTQQIWVAQQEIKAAEVRANARADEIKRVMTIIKEGQRKAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQELGREPTPEEIATKMESIISLSLREQTNKVLNSLTPREEKVLRLRFGLSDGCEHTLEEVGQDFAVTRERIRQIEAKALRKLRHPSRSKKLRSFLES*