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PLM1_100_coex_sep16_Rokubacteria_71_11

PLM1_100cm_coex_sep2016_Rokubacteria_71_11
In projects: PLM1_100cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  rokubacteria_ggkbase

Consensus taxonomy: Rokubacteria  →  Bacteria

Displaying items 251-300 of 679 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM1_100_coex_sep16_scaffold_6783
Class: Betaproteobacteria (66.67%)
3 2788 bp 71.63 10.17 92.86
PLM1_100_coex_sep16_scaffold_1377
Phylum: Rokubacteria (75%)
8 7608 bp 72.56 10.17 97.32
PLM1_100_coex_sep16_scaffold_2560
Phylum: Rokubacteria (83.33%)
6 4616 bp 68.41 10.17 92.61
PLM1_100_coex_sep16_scaffold_6933
Species: GWA2_Rokubacteria_73_35_curated (80%)
5 2755 bp 71.29 10.18 95.72
PLM1_100_coex_sep16_scaffold_4249
Domain: Bacteria (66.67%)
3 3904 bp 69.03 10.18 82.61
PLM1_100_coex_sep16_scaffold_3154
Species: R_Rokubacteria_73_56 (80%)
5 4127 bp 74.22 10.18 96.83
PLM1_100_coex_sep16_scaffold_8842
Class: Betaproteobacteria (50%)
6 5209 bp 70.26 10.19 91.69
PLM1_100_coex_sep16_scaffold_1206
Phylum: Rokubacteria (54.55%)
11 11187 bp 70.42 10.20 87.18
PLM1_100_coex_sep16_scaffold_1463
Phylum: Rokubacteria (60%)
10 6233 bp 68.36 10.20 85.72
PLM1_100_coex_sep16_scaffold_7583
Domain: Bacteria (85.71%)
7 6763 bp 69.87 10.20 93.38
PLM1_100_coex_sep16_scaffold_6197
Phylum: Rokubacteria (100%)
9 7190 bp 70.71 10.20 91.38
PLM1_100_coex_sep16_scaffold_7022
Species: RLO_Rokubacteria_71_22 (50%)
4 2736 bp 71.89 10.20 100.44
PLM1_100_coex_sep16_scaffold_1947
Domain: Bacteria (75%)
4 5337 bp 73.69 10.20 98.59
PLM1_100_coex_sep16_scaffold_6006
Domain: Bacteria (66.67%)
3 3908 bp 70.16 10.21 72.85
PLM1_100_coex_sep16_scaffold_2087
Phylum: Rokubacteria (71.43%)
7 5138 bp 74.50 10.22 96.87
PLM1_100_coex_sep16_scaffold_5717
Species: GWA2_Rokubacteria_73_35_curated (50%)
4 3039 bp 71.24 10.22 92.20
PLM1_100_coex_sep16_scaffold_3789
Species: R_Rokubacteria_71_18 (50%)
4 3738 bp 70.22 10.23 97.83
PLM1_100_coex_sep16_scaffold_6196
Species: RLO_Rokubacteria_71_22 (50%)
6 4749 bp 69.80 10.23 96.72
PLM1_100_coex_sep16_scaffold_5182
Phylum: Rokubacteria (88.89%)
9 6231 bp 72.12 10.23 97.59
PLM1_100_coex_sep16_scaffold_7059
Species: R_Rokubacteria_73_56 (75%)
4 3911 bp 71.49 10.24 91.28
PLM1_100_coex_sep16_scaffold_1402
Class: Alphaproteobacteria (50%)
6 6389 bp 69.68 10.24 89.12
PLM1_100_coex_sep16_scaffold_1151
Phylum: Rokubacteria (88.89%)
27 25339 bp 70.16 10.24 94.48
PLM1_100_coex_sep16_scaffold_5422
Species: Candidatus Entotheonella sp. TSY2 (100%)
4 3118 bp 66.48 10.25 99.10
PLM1_100_coex_sep16_scaffold_5333
Domain: Bacteria (100%)
3 3142 bp 68.52 10.26 97.10
PLM1_100_coex_sep16_scaffold_3616
Species: GWA2_Rokubacteria_73_35_curated (60%)
5 3832 bp 69.99 10.26 96.37
PLM1_100_coex_sep16_scaffold_6840
Phylum: Rokubacteria (50%)
8 5161 bp 70.34 10.26 87.42
PLM1_100_coex_sep16_scaffold_5258
Species: R_Rokubacteria_73_56 (100%)
2 3157 bp 69.75 10.26 97.50
PLM1_100_coex_sep16_scaffold_16501
Phylum: Rokubacteria (83.33%)
6 2557 bp 71.06 10.27 96.83
PLM1_100_coex_sep16_scaffold_8092
Class: Deltaproteobacteria (50%)
4 4118 bp 70.42 10.27 100.46
PLM1_100_coex_sep16_scaffold_15243
Species: RLO_Rokubacteria_71_22 (50%)
2 2864 bp 69.41 10.27 94.06
PLM1_100_coex_sep16_scaffold_6247
Species: Cystobacter fuscus (50%)
2 2906 bp 68.65 10.27 94.56
PLM1_100_coex_sep16_scaffold_5349
Phylum: Rokubacteria (100%)
5 3137 bp 72.65 10.28 99.55
PLM1_100_coex_sep16_scaffold_10580
Species: RBG_16_Betaproteobacteria_66_20_curated (60%)
5 3664 bp 68.23 10.28 98.50
PLM1_100_coex_sep16_scaffold_3105
Domain: Bacteria (71.43%)
7 5398 bp 69.47 10.28 92.31
PLM1_100_coex_sep16_scaffold_4155
Species: R_Rokubacteria_73_56 (57.14%)
7 4462 bp 68.85 10.29 86.46
PLM1_100_coex_sep16_scaffold_2608
Domain: Bacteria (80%)
5 5756 bp 71.47 10.29 96.53
PLM1_100_coex_sep16_scaffold_5849
Species: GWA2_RIF03_38_11_curated (50%)
2 3004 bp 71.84 10.29 97.17
PLM1_100_coex_sep16_scaffold_2162
Phylum: Rokubacteria (66.67%)
6 5028 bp 72.99 10.29 98.87
PLM1_100_coex_sep16_scaffold_5280
Class: Deltaproteobacteria (50%)
4 3153 bp 69.36 10.32 88.96
PLM1_100_coex_sep16_scaffold_3509
Species: CSP1_6_Rokubacteria (75%)
4 3897 bp 69.64 10.32 96.23
PLM1_100_coex_sep16_scaffold_3165
Phylum: Rokubacteria (80%)
10 7866 bp 70.65 10.32 90.24
PLM1_100_coex_sep16_scaffold_2284
Phylum: Rokubacteria (87.5%)
8 6369 bp 70.40 10.32 97.03
PLM1_100_coex_sep16_scaffold_3019
Species: GWA2_Rokubacteria_70_23_curated (60%)
5 4226 bp 70.71 10.33 97.54
PLM1_100_coex_sep16_scaffold_7453
Domain: Bacteria (100%)
3 2658 bp 70.84 10.33 94.58
PLM1_100_coex_sep16_scaffold_5305
Species: GWC2_Rokubacteria_70_16_curated (50%)
4 3148 bp 70.93 10.34 101.30
PLM1_100_coex_sep16_scaffold_5411
Phylum: Rokubacteria (60%)
5 5816 bp 70.86 10.34 94.45
PLM1_100_coex_sep16_scaffold_3965
Species: R_Rokubacteria_73_56 (75%)
4 3654 bp 69.87 10.34 97.45
PLM1_100_coex_sep16_scaffold_2677
Phylum: Proteobacteria (50%)
6 4506 bp 68.20 10.35 82.02
PLM1_100_coex_sep16_scaffold_3737
Domain: Bacteria (60%)
5 3763 bp 69.81 10.36 94.95
PLM1_100_coex_sep16_scaffold_4656
Species: GWC2_Syntrophus_56_31_curated (50%)
2 3360 bp 66.82 10.36 93.48
Displaying items 251-300 of 679 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.