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PLM1_30_b1_sep16_scaffold_14999_3

Organism: PLM1_30_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 48 / 55 MC: 6 BSCG 48 / 51 MC: 3 ASCG 13 / 38 MC: 1
Location: comp(775..1338)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor Tax=Amycolatopsis mediterranei RepID=D8I877_AMYMU similarity UNIREF
DB: UNIREF100
  • Identity: 44.6
  • Coverage: 186.0
  • Bit_score: 144
  • Evalue 1.00e-31
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 44.6
  • Coverage: 186.0
  • Bit_score: 144
  • Evalue 2.90e-32
RNA polymerase sigma factor {ECO:0000313|EMBL:AEK39874.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.6
  • Coverage: 186.0
  • Bit_score: 144
  • Evalue 1.40e-31

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Taxonomy

Amycolatopsis mediterranei → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 564
ATGGGTGCCGAGATCGACGCACACGACCTCGTCCAGGCGGCGGCCGCCGGCGATTCCCATGGTTGGGACGGCCTCGTGGAGCGATTCGGTGCGCTGGTCTGGTCGACCGCTCGAGCGTGGGGCCTGAGCCCGGACGAGGGAGCCGACGTCGCCCAGACGACCTGGCTGCGCCTGGCCGAGCAGCTCGGCCGCCTACGGGATGGGCACGACCGGATCGGGGTGTGGTTGGCGTCGACGGCCCGGCAAGAAAGCCTGCGCCTGGTGGTGACACGGGTCGCAGACCATGCCGACCCCGGCCAGGACGAGCCTGCGGCGCCACCCGCCGCCACGGCGACCCCACTGGAGCCGGAGGTCGTGCTCTGGCGGGTCCTCTATGACCTGCCGGCGCACTGCCGACGCCTGCTACGTGTCCTGAGCGCCGTCCCGCCACCCGACCAGGAGGAGCTGGCGGCCGCTCTGGATCTGAAGGTCACCGACGTCCCGGCCGCCAGGGTCGCCTGCCTGGAGGTATTCCGTGACCGGATGGCCAATATCGGTATCAAGGCGGATGTAGAGGACTCTTAA
PROTEIN sequence
Length: 188
MGAEIDAHDLVQAAAAGDSHGWDGLVERFGALVWSTARAWGLSPDEGADVAQTTWLRLAEQLGRLRDGHDRIGVWLASTARQESLRLVVTRVADHADPGQDEPAAPPAATATPLEPEVVLWRVLYDLPAHCRRLLRVLSAVPPPDQEELAAALDLKVTDVPAARVACLEVFRDRMANIGIKADVEDS*