ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_213_8

Organism: PLM1_60_b1_redo_sep16_Actinobacteridae_Actinomycetales_73_33

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 3 ASCG 13 / 38 MC: 1
Location: comp(4419..4961)

Top 3 Functional Annotations

Value Algorithm Source
16S rRNA-processing protein RimM Tax=Nocardiopsis xinjiangensis RepID=UPI00034A5B44 similarity UNIREF
DB: UNIREF100
  • Identity: 52.6
  • Coverage: 175.0
  • Bit_score: 149
  • Evalue 1.80e-33
16S rRNA processing protein rimm similarity KEGG
DB: KEGG
  • Identity: 52.0
  • Coverage: 177.0
  • Bit_score: 146
  • Evalue 5.60e-33
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.1
  • Coverage: 175.0
  • Bit_score: 146
  • Evalue 2.80e-32

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Nocardiopsis dassonvillei → Nocardiopsis → Streptosporangiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 543
ATGACCGAGGTCCCGGCCCGGTTCGTGGTCGGCCGGGTGCTCCGTCCCCACGGCGTGCACGGAGAGGTCACCGTCGAGGTCCTCTCCGACGCACCCGGGCGGTTCGCGCCCGGCAGCGAGCTCGCCCTCGGCGACCCCGACACCGGGGGCGCCACCCGCACCGGCCTGCGCCCCCTGGTCGTCGTCACCGCCCGCCACCACCACGGCCGCTTGCTGCTCACCCTCGAAGGGGTCGACGACCGCGACGCCGCCGACGCCCTCCGCGGCGGCCTGCTCTCCATCCCCCTGGAGACGGCCCGCCCCCTCGAGCCCGGCGAGTTCTGGGCCCACCAGCTCATCGGCCTGCCCGTGCTCGACCGCGACGGCGAGCCCCGCGGGACCGTTGCCGACGTCCTGCCCGGCACCGCCCACGACCTGCTCTCGGTCAGGCTCCCGGACGACCGGACCGCGCTCGTGCCCGCCGTCGCCGCCCTCGTCACCGTCGACCTCGACGCCGGCCGGGTCGTCGTCGACGCCCTCCCCGGCCTGCTCGACCCCTCCTGA
PROTEIN sequence
Length: 181
MTEVPARFVVGRVLRPHGVHGEVTVEVLSDAPGRFAPGSELALGDPDTGGATRTGLRPLVVVTARHHHGRLLLTLEGVDDRDAADALRGGLLSIPLETARPLEPGEFWAHQLIGLPVLDRDGEPRGTVADVLPGTAHDLLSVRLPDDRTALVPAVAALVTVDLDAGRVVVDALPGLLDPS*