ggKbase home page

PLM1_60_coex_sep16_scaffold_21908_5

Organism: PLM1_60_coex_sep16_Tectomicrobia_59_6

near complete RP 42 / 55 MC: 1 BSCG 43 / 51 ASCG 12 / 38
Location: 2762..3235

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.2
  • Coverage: 138.0
  • Bit_score: 183
  • Evalue 1.40e-43
Ribonuclease VapC Tax=Thiothrix nivea DSM 5205 RepID=I3BUI8_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 65.2
  • Coverage: 138.0
  • Bit_score: 183
  • Evalue 9.70e-44
PilT domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 59.7
  • Coverage: 139.0
  • Bit_score: 179
  • Evalue 6.80e-43

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 474
TTGAGCGCCTTGAGGACGCCGACGAAGACGCGCATGTATTTGATTAATACCAATGTTATCAGTGAGGCCAGAAAGCGCGCCAAAGCCAACCGAGGCGTCATCGCATTCTTTCAGCGGGTCTCAAGGGAGAGGAGCCCGGTTTTTATCTCCGTAATCACGGTTGGGGAGCTGCGACGAGGCATTGAGTTGATCCGCCATCGCGGTGATCGTCGCCAGGCGGAGCGGTTGGAGACGTGGTTAGAAACGCTGCTCATCGAGCACCAGGACAGTATCCTGGCCATCGATCAAGACGTTGCGCAGCTATGGGGGCGTCTGTGCGTGCCGCATCCAGAGAACGCTCTGCATAAACAGATAGCGGCAACGGCCCTGATTTACGACCTCACCGTCGTCACCCGTAATCAGGCGGACTTTCACCAAACCGGGGTACGCATATTGAACCCGTTCACCGCGGAGGAGACAGCAAGAGATCAGTAG
PROTEIN sequence
Length: 158
LSALRTPTKTRMYLINTNVISEARKRAKANRGVIAFFQRVSRERSPVFISVITVGELRRGIELIRHRGDRRQAERLETWLETLLIEHQDSILAIDQDVAQLWGRLCVPHPENALHKQIAATALIYDLTVVTRNQADFHQTGVRILNPFTAEETARDQ*