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PLM1_60_coex_sep16_scaffold_8169

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_coex_sep16_scaffold_8169_1
unknown

Not on your lists

comp(2..178)
DNA (177bp) protein (59aa)

This feature has no annotations

PLM1_60_coex_sep16_scaffold_8169_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(184..1131)
DNA (948bp) protein (316aa)
Chromate resistance exported protein bin=GWC2_Methylomirabilis_70_16 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_60_coex_sep16_scaffold_8169_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1598..1909
DNA (312bp) protein (104aa)
High-affinity nickel-transport family protein bin=GWC2_Methylomirabilis_70_16 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_8169_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1917..2264
DNA (348bp) protein (116aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F582_CONWI
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM1_60_coex_sep16_scaffold_8169_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2261..2743
DNA (483bp) protein (161aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XAH2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63007.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM1_60_coex_sep16_scaffold_8169_6
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2749..3579)
DNA (831bp) protein (277aa)
Encapsulating protein for a DyP-type peroxidase or ferritin-like protein oligomers Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DR33_THIND
lin_[H]; Encapsulating protein for a DyP-type peroxidase or ferritin-like protein oligomers
Encapsulating protein for a DyP-type peroxidase or ferritin-like protein oligomers {ECO:0000313|EMBL:AGA32039.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
PLM1_60_coex_sep16_scaffold_8169_7
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3576..3965)
DNA (390bp) protein (130aa)
ferritin Tax=Methylohalobius crimeensis RepID=UPI0003B5E026
Uncharacterized protein {ECO:0000313|EMBL:KJE23549.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
Ferritin/ribonucleotide reductase-like
PLM1_60_coex_sep16_scaffold_8169_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4089..5288
DNA (1200bp) protein (400aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI00037D7937
cytosine deaminase
Cytosine deaminase {ECO:0000313|EMBL:AIB16177.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM1_60_coex_sep16_scaffold_8169_9
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5294..5725
DNA (432bp) protein (144aa)
Uncharacterized protein Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ECN3_RUNSL
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM1_60_coex_sep16_scaffold_8169_10
unknown

Not on your lists

comp(5680..5865)
DNA (186bp) protein (62aa)

This feature has no annotations

PLM1_60_coex_sep16_scaffold_8169_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6017..7729)
DNA (1713bp) protein (571aa)
60 kDa chaperonin bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
groL; 60 kDa chaperonin (Protein Cpn60) (groEL protein)
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_8169_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7776..8084)
DNA (309bp) protein (103aa)
10 kDa chaperonin bin=GWC2_Methylomirabilis_70_16 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
groS; chaperone Hsp10 (GroES), part of GroE chaperone system
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_8169_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8430..8795
DNA (366bp) protein (122aa)
sigma-54 dependent response regulator
Histidine kinase bin=GWA2_Methylomirabilis_73_35 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_60_coex_sep16_scaffold_8169_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8750..10858
DNA (2109bp) protein (703aa)
Histidine kinase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_60_coex_sep16_scaffold_8169_15
unknown

Not on your lists

comp(10869..11219)
DNA (351bp) protein (117aa)

This feature has no annotations

PLM1_60_coex_sep16_scaffold_8169_16
unknown

Not on your lists

comp(11227..11577)
DNA (351bp) protein (117aa)

This feature has no annotations

PLM1_60_coex_sep16_scaffold_8169_17
RIFOXYC2_FULL_RIF01_39_67_curated, RIF1, Bacteria

Not on your lists

11757..12476
DNA (720bp) protein (240aa)
hypothetical protein Tax=Kordiimonas gwangyangensis RepID=UPI00035D3E3A
Alpha/beta hydrolase fold protein
Tax=RIFOXYC2_FULL_RIF01_39_67_curated
PLM1_60_coex_sep16_scaffold_8169_18
unknown

Not on your lists

12473..12601
DNA (129bp) protein (43aa)

This feature has no annotations

PLM1_60_coex_sep16_scaffold_8169_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

12701..12940
DNA (240bp) protein (80aa)
hypothetical protein bin=bin7_NC10_sister species=Laribacter hongkongensis genus=Laribacter taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_60_coex_sep16_scaffold_8169_20
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

13288..14052
DNA (765bp) protein (255aa)
formyl-CoA transferase (EC:2.8.3.16)
Formyl-CoA transferase {ECO:0000313|EMBL:ABJ84069.1}; EC=2.8.3.16 {ECO:0000313|EMBL:ABJ84069.1};; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Formyl-CoA transferase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022N1_SOLUE
PLM1_60_coex_sep16_scaffold_8169_21
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14070..14234
DNA (165bp) protein (55aa)
citrate (pro-3S)-lyase (EC:4.1.3.6)
Citrate (Pro-3S)-lyase {ECO:0000313|EMBL:EZP56317.1}; EC=4.1.3.6 {ECO:0000313|EMBL:EZP56317.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
Citrate (Pro-3S)-lyase Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BWC7_DELAS
PLM1_60_coex_sep16_scaffold_8169_22
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(14238..14486)
DNA (249bp) protein (83aa)
sodium/hydrogen exchanger Tax=Streptomyces sp. CNS615 RepID=UPI000380213E
Na+/H+ antiporter
Na+/H+ antiporter {ECO:0000313|EMBL:ADB53390.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Displaying 22 items

View Taxonomy