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PLM4_65_b1_redo_sep16_scaffold_3028

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3028_1
unknown

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1..663
-----------------
DNA (663bp)
protein (221aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3028_2
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

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761..1768
-----------------
DNA (1008bp)
protein (336aa)
Alpha-L-rhamnosidase Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q7W6_CATAD
alpha-L-rhamnosidase
Alpha-L-rhamnosidase {ECO:0000313|EMBL:ACU74133.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM4_65_b1_redo_sep16_scaffold_3028_3
unknown

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comp(1853..2215)
-----------------
DNA (363bp)
protein (121aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3028_4

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comp(2205..2459)
-----------------
DNA (255bp)
protein (85aa)
Plasmid stabilization system protein Tax=mine drainage metagenome RepID=T1ABQ2_9ZZZZ
Plasmid stabilization system protein {ECO:0000313|EMBL:EQD39285.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PLM4_65_b1_redo_sep16_scaffold_3028_5
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(2514..3653)
-----------------
DNA (1140bp)
protein (380aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AXS5_SYNWW
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_3028_6
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(3653..5092)
-----------------
DNA (1440bp)
protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
ATP-binding region ATPase domain protein Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W075_DESIS
ATPase ATP-binding domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_3028_7
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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5289..5741
-----------------
DNA (453bp)
protein (151aa)
hspA-1; ATP-independent chaperone, alpha-crystallin/Hsp20 family; K13993 HSP20 family protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
heat shock protein Hsp20
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_3028_8
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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5829..7460
-----------------
DNA (1632bp)
protein (544aa)
hypothetical protein Tax=Alicyclobacillus pohliae RepID=UPI0003624303
Uncharacterized protein {ECO:0000313|EMBL:KDA53655.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
family 5 extracellular solute-binding protein
PLM4_65_b1_redo_sep16_scaffold_3028_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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7463..8428
-----------------
DNA (966bp)
protein (322aa)
Binding-protein-dependent transport systems inner membrane component Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QM26_CHLP8
binding-protein-dependent transport systems inner membrane component
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_3028_10
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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8437..9495
-----------------
DNA (1059bp)
protein (353aa)
Oligopeptide transport system permease protein AppC Tax=Desulfovibrio piezophilus (strain DSM 21447 / JCM 15486 / C1TLV30) RepID=M1WJU9_DESPC
Peptide ABC transporter permease {ECO:0000313|EMBL:KIH76636.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
peptide ABC transporter permease
PLM4_65_b1_redo_sep16_scaffold_3028_11
Thermovibrio ammonificans, Thermovibrio, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

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9495..10559
-----------------
DNA (1065bp)
protein (355aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; species="Bacteria; Aquificae; Desulfurobacteriales; Desulfurobacteriaceae; Thermovibrio.;" source="Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1).;"
S-adenosylmethionine tRNA ribosyltransferase Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B7AD5C
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
PLM4_65_b1_redo_sep16_scaffold_3028_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(10556..11311)
-----------------
DNA (756bp)
protein (252aa)
NCAIR mutase-like protein; K06898 bin=bin7_NC10_sister species=Clostridium sp. BNL1100 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_3028_13
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

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comp(11308..12117)
-----------------
DNA (810bp)
protein (270aa)
Putative uncharacterized protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AX33_RUBXD
hypothetical protein
Tax=RBG_16_KB1_OP1_55_9_curated
PLM4_65_b1_redo_sep16_scaffold_3028_14
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12159..12743)
-----------------
DNA (585bp)
protein (195aa)
LOG family protein PA4923 Tax=Labrenzia RepID=U7GBV3_9RHOB
LOG family protein PA4923 {ECO:0000313|EMBL:ERP94136.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
LOG family protein
PLM4_65_b1_redo_sep16_scaffold_3028_15
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12744..15575)
-----------------
DNA (2832bp)
protein (944aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
gcvP; glycine dehydrogenase, glycine cleavage system P protein (EC:1.4.4.2)
Glycine dehydrogenase (decarboxylating) Tax=Plesiocystis pacifica SIR-1 RepID=A6G6G8_9DELT
PLM4_65_b1_redo_sep16_scaffold_3028_16
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15643..16029)
-----------------
DNA (387bp)
protein (129aa)
Glycine cleavage system H protein bin=GWC2_Pelobacter_58_13 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
glycine cleavage system protein H
Tax=GWD2_Desulfuromonadales_61_12_curated
PLM4_65_b1_redo_sep16_scaffold_3028_17
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(16084..17211)
-----------------
DNA (1128bp)
protein (376aa)
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10)
Aminomethyltransferase Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TP95_9CHLR
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_3028_18
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

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17306..18250
-----------------
DNA (945bp)
protein (315aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I9E4_CALAS
conserved hypothetical protein
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO45118.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
Displaying 18 items

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