ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_17547_3

Organism: PLM4_65_b1_sep16_Acidobacteria_Holophagae_54_7

near complete RP 48 / 55 BSCG 50 / 51 MC: 1 ASCG 13 / 38
Location: comp(913..1521)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily Tax=uncultured Acidobacteria bacterium RepID=H5SBR5_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 45.4
  • Coverage: 205.0
  • Bit_score: 159
  • Evalue 2.50e-36
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.0
  • Coverage: 200.0
  • Bit_score: 249
  • Evalue 2.60e-63
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 42.7
  • Coverage: 192.0
  • Bit_score: 145
  • Evalue 1.10e-32

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pyrinomonas methylaliphatogenes → Pyrinomonas → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 609
ATGAGGTCATCTGCATCTCCCGATATTCTGAGTTTTAGTTCTGCTGCCGATCGGGAACTCGTTGCCAGCGCCGCCCGGGGTTTCGAAGGCGGTTTTGAGGAGCTGGTTAGACGATATCAGCGACCAATCTCGGGCTACGTTTACCGTATGGTGGGCGATTACGAAGCGGCTCTCGATCTAACCCAGGAAATCTTCATTAAGATCTATGGGTCGCTTTCGCGCTATCGTCCGGAGTTTAAATTTTCGACCTGGATTTACAGGATTGCACACAACGCGGCGATCGATCACCTGCGCCGGAACTCCGGGCGCGAACGATCCCTGATCAACGGGAGCGAAGGCGACAGTTACGATCTTCCGCTCGAGAGCGAAGGTCTCAGCCCGGAGCAGCAGAGCGAAAGGGAAGAGCGGCGGGTAGAAATAGAAGTAGTGGTGCGTTCGCTTCCGACCGCCTATCGTGAGCTGGTAGTTTTGCGCCATTCGCAAGATCTGACCTATGAAGAAATTGTCGACGTCACGGGCTTGCCACTGGGTACGGTCAAGAATCGTTTGTTTCGTGCCCGGGAAATGATGCGACAGCAGTTCCTAAACAAAGGCATTACCGGGATCTGA
PROTEIN sequence
Length: 203
MRSSASPDILSFSSAADRELVASAARGFEGGFEELVRRYQRPISGYVYRMVGDYEAALDLTQEIFIKIYGSLSRYRPEFKFSTWIYRIAHNAAIDHLRRNSGRERSLINGSEGDSYDLPLESEGLSPEQQSEREERRVEIEVVVRSLPTAYRELVVLRHSQDLTYEEIVDVTGLPLGTVKNRLFRAREMMRQQFLNKGITGI*