ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

PLM4_65_b1_redo_sep16_scaffold_85045_1

Organism: PLM4_65_b1_sep16_Acidobacteria_71_15

near complete RP 49 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 13 / 38
Location: comp(3..1070)

Top 3 Functional Annotations

Value Algorithm Source
Nuclease SbcCD, D subunit Tax=Frankia sp. CN3 RepID=G6HEF6_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 44.9
  • Coverage: 361.0
  • Bit_score: 273
  • Evalue 1.60e-70
Nuclease SbcCD, D subunit {ECO:0000313|EMBL:EFC83764.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.0
  • Coverage: 361.0
  • Bit_score: 273
  • Evalue 3.00e-70
exonuclease similarity KEGG
DB: KEGG
  • Identity: 42.9
  • Coverage: 361.0
  • Bit_score: 270
  • Evalue 3.90e-70

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Frankia sp. EUN1f → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1068
GTGCGCTTCCTCCACACGGCCGACTGGCATGTCGGCAAGCCGCTTCGCGGCCGATCCCGCATGGACGAGTACGCTGGTGCGCTCGACCAGGTGGCCGCGATCGCGAAGGACCAGAAGGTCGACGCGGTCCTCATGGCCGGCGACGTCTTCGACTCGCCGGCCCCGCCGCCCGAGGCCGAGAAGCTCGTCTACAACTTCCTCGCGAGGCTCGTCTCCGAGCGGATCCAGTGCGTGCTGATCGCCGGCAACCACGACCACGCGCGCAAGCTCGACGCGCTCGCGACGCTGCTCGAGAGCCTCGGCATCCACGTCCGCCACGAGGTGCGCCCGCCGAATCAGGGCGGCGTCGTCAAGCTCACCTCGCGCGACGGGAAAGAGGAAGCGCGCGTGGCGGTGCTGCCGTTCGTCGCCGAGCGCAAGGTGGTCGACGCCTGCATGGTGATGGACGCCGAGCACAAGTGGTTCGACGCCTACGGGAAGCGCGTCGAGGACATCCTGGCCGCGCTCGTGAAGGGCCTCCCGGCCACCAGCGTCAACGTCGTCCTCGCCCACCTCCTGGTGGACGGGGCGCGCGTCGGCACGGGAGAGCGCGAGCTGCACCTCGGCCAGATCTACGGTGTCAACCCGCAACAGCTCCCGTCCTCGGTTCAGTACATCGCGCTGGGCCACCTCCACCGGCCGCAGGAGGTCCTGGCCCCCGCGAAGACCCGCTATCCCGGCTCCCTGATCGAGCTCGACTTCGGCGAGCAGGAGCAGGACAAGAGCGTCGTCGTCCTCGACGCGCAACCCCAGCGGCCGCCCCACATCGAGCTCGTGCCCCTAACGGCGGGACGACGGCTGCGCACGGTCGAGGGCACGCTGGACGACTTGCAGCGCCTCGCGGAGGAGAGAAGCGACGACTACCTGCGCGTCCGCGTGAAGGCCGAAGCCCCCACGCCCGGCCTCGCGGATCGCGTCAAGGAGCTGCTCCCGAACGCCCTCGACGTGACGGTGGACCACCCTCGCGACGCAAGCGCACAACCCGAGCGCGGCAAGGGCCGCGGCAAGCTCGCCCCCGCCCAGCTCTTC
PROTEIN sequence
Length: 356
VRFLHTADWHVGKPLRGRSRMDEYAGALDQVAAIAKDQKVDAVLMAGDVFDSPAPPPEAEKLVYNFLARLVSERIQCVLIAGNHDHARKLDALATLLESLGIHVRHEVRPPNQGGVVKLTSRDGKEEARVAVLPFVAERKVVDACMVMDAEHKWFDAYGKRVEDILAALVKGLPATSVNVVLAHLLVDGARVGTGERELHLGQIYGVNPQQLPSSVQYIALGHLHRPQEVLAPAKTRYPGSLIELDFGEQEQDKSVVVLDAQPQRPPHIELVPLTAGRRLRTVEGTLDDLQRLAEERSDDYLRVRVKAEAPTPGLADRVKELLPNALDVTVDHPRDASAQPERGKGRGKLAPAQLF