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PLM1_60_b1_redo_sep16_scaffold_331_28

Organism: PLM1_60_b1_sep16_Acidothermus_cellulolyticus_70_16

near complete RP 52 / 55 BSCG 50 / 51 MC: 1 ASCG 13 / 38 MC: 3
Location: comp(28253..28855)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseorubens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 33.2
  • Coverage: 208.0
  • Bit_score: 78
  • Evalue 1.00e-11
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 28.2
  • Coverage: 170.0
  • Bit_score: 60
  • Evalue 3.40e-07
ECF subfamily RNA polymerase sigma factor bin=GWF2_Lentisphaerae_50_93 species=ACD51 genus=ACD51 taxon_order=ACD51 taxon_class=ACD51 phylum=PER tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S similarity UNIREF
DB: UNIREF100
  • Identity: 22.0
  • Coverage: 173.0
  • Bit_score: 57
  • Evalue 1.30e-05

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Taxonomy

Streptomyces griseorubens → Streptomyces → Streptomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 603
ATGCCGCTCTCCCAGAGTAAACCTGCAAGCGTCCGGACCTACGACGACATCCCGCCCGATGTAGCCTGCCTGCACAACGCTCAGGCCGGTGACCGAGAGGCATTCGCCGAGCTGTACCGCCGCAATGCCCGGGTCGTAAGACGCTACCTGTTCGTCCGGATGTCCCGGATGGGTTGGATACGCGACCTGGACTCTGTGGCCGATTTGGTCCAGGAGACATTCTGCGAGGCGTTCGCGGACCTGACGAACGCCCGAGATGACGTACGCGGCTGGCTGATCCTGCACGCCGCATGTGCTTTTAATCGGTATGACTGGGGGCGCCGGAGGTACTTGCGGGCAGCCTACCTTCAGTACCACCGAGCACGAACCTCCAGGCTGTTCGCTCAGGACGATGAGCCGGCAATACCTGACCGCTTGCGGCTGTGGGAGGCGTTACCTCGCCTGGGATCTGACCAACGCCGCTGTGTGCAACTGCGGTATCTGGAGGGACTTCCGGCTGAGCTCATGGCCGGCCTAATGGGTCGCACGACCAACGCCGTCCGCCTACTCGAACGCCGCGCCCTGATACGACTTCGCGTCGTCCTCACCGCGCTAGACGCGTAA
PROTEIN sequence
Length: 201
MPLSQSKPASVRTYDDIPPDVACLHNAQAGDREAFAELYRRNARVVRRYLFVRMSRMGWIRDLDSVADLVQETFCEAFADLTNARDDVRGWLILHAACAFNRYDWGRRRYLRAAYLQYHRARTSRLFAQDDEPAIPDRLRLWEALPRLGSDQRRCVQLRYLEGLPAELMAGLMGRTTNAVRLLERRALIRLRVVLTALDA*