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PLM1_60_b1_redo_sep16_scaffold_198_11

Organism: PLM1_60_b1_sep16_Acidothermus_cellulolyticus_70_16

near complete RP 52 / 55 BSCG 50 / 51 MC: 1 ASCG 13 / 38 MC: 3
Location: 10683..11273

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YAR7_THEBD similarity UNIREF
DB: UNIREF100
  • Identity: 68.9
  • Coverage: 183.0
  • Bit_score: 236
  • Evalue 1.20e-59
ECF subfamily RNA polymerase sigma-24 similarity KEGG
DB: KEGG
  • Identity: 68.9
  • Coverage: 183.0
  • Bit_score: 236
  • Evalue 3.40e-60
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADG88284.1}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.9
  • Coverage: 183.0
  • Bit_score: 236
  • Evalue 1.70e-59

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Taxonomy

Thermobispora bispora → Thermobispora → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 591
ATGGCTCGCATCCGACCCGTGGACCCGGCGCCCGTGAAGCCTGCGTCGGCTGGGTTACCGCCGTACCCCGGTGACCTGACCAGGGAGTCCGCGCTGGTGGCGCTCTTCGACCAGCACTACACGGGCCTGCTCCGGCTGGCCGTACTGCTCGGCGCCGACGACGCCGAGGACATCGTCGCGGAGGCGTTCTGCCAGCTCTACCGGCGGTGGAACCGGCTCCGCAGCACCGAGGCGGCGCTGCCGTACCTGCGTTCGGTGATCTGCAACCTGGTGCGGATGCGCGTCCGGCACCTCCAGGTGGTGCGGAAACACACCGAACGGCCGGGCGGCCCGACCGACTCCGCCGAGAGTGAGGCGCTGCTCCGCGAGGACCAGCGCGCGCTCGTCAACGCGCTCAAGGGGCTGCCGGCGCGCCAGCGGGAGGCGCTGGTGCTGCGGTACTGGCTCAGCCTGCGCGAGACCGAGATCGCCGCGGCGATGGGTATCTCCTGCGGCGCGGTCAAGTCACACACCGCGCGGGGGATGGCCGCACTGACGCGGGTACTGACCGGCCACTCTCGGCTGCCAGGCAAGGAGGAGGAACACCGATGA
PROTEIN sequence
Length: 197
MARIRPVDPAPVKPASAGLPPYPGDLTRESALVALFDQHYTGLLRLAVLLGADDAEDIVAEAFCQLYRRWNRLRSTEAALPYLRSVICNLVRMRVRHLQVVRKHTERPGGPTDSAESEALLREDQRALVNALKGLPARQREALVLRYWLSLRETEIAAAMGISCGAVKSHTARGMAALTRVLTGHSRLPGKEEEHR*