ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_12389_6

Organism: PLM1_60_b1_sep16_Acidothermus_cellulolyticus_70_16

near complete RP 52 / 55 BSCG 50 / 51 MC: 1 ASCG 13 / 38 MC: 3
Location: comp(4652..5191)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 Tax=Salinispora tropica RepID=UPI00037A37A3 similarity UNIREF
DB: UNIREF100
  • Identity: 46.1
  • Coverage: 193.0
  • Bit_score: 127
  • Evalue 7.20e-27
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:ETK35385.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.9
  • Coverage: 205.0
  • Bit_score: 137
  • Evalue 1.70e-29
sigma-70 region 2 domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 46.1
  • Coverage: 193.0
  • Bit_score: 127
  • Evalue 2.00e-27

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Microbispora sp. ATCC PTA-5024 → Microbispora → Streptosporangiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 540
AAACGAAAGATCCGCGCCGCGGGGATCTCCTTGCGAATCCCGTCACCCGACGGGCTGCCCGCCCGGCTGGCCACCGTGCTGCGCGTGGTCTACCTGATCTTCACCGAGGGCCACACGGCCACGACCGGCTCCGCGCTGGTCCGCGGCGAGCTGTGTGACCAGGCGATCCGGCTGGCCCGCGCTCTCACCGAGCTGCTGCCGCACGAGCCGGAGGTGACCGGCCTGCTGGCGCTGCTGTTGCTCACCGACGCCCGCCGCAACGCCCGCCTCGATGAGCCGACCCCGGTGGTGGAGGCCAACCGGGCCGTCGCGGTCGCCATGGCCGAAGGGCCAGCAGCCGGCCTGGTCATCCTCGACGCCGTCGGCACCCACCCCCAGCTGGCCCGCTGGCCGCAACTGCACATCGCCCGGGCAGACCTGCTACGCCGCCTCGGCCGCCACGACGAGGCGGTAGAGGCGTATCGCACCGCGCTGCACCTGGAACCACCCGCAGCCGAACTGGCCTTCATCCACCGTCGCATCGCCCAGCTGACCACCTGA
PROTEIN sequence
Length: 180
KRKIRAAGISLRIPSPDGLPARLATVLRVVYLIFTEGHTATTGSALVRGELCDQAIRLARALTELLPHEPEVTGLLALLLLTDARRNARLDEPTPVVEANRAVAVAMAEGPAAGLVILDAVGTHPQLARWPQLHIARADLLRRLGRHDEAVEAYRTALHLEPPAAELAFIHRRIAQLTT*