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PLM1_60_b1_redo_sep16_scaffold_4_6

Organism: PLM1_60_b1_redo_sep16_Actinobacteridae_Actinomycetales_73_33

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 3 ASCG 13 / 38 MC: 1
Location: 5308..6189

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CRS6_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 59.4
  • Coverage: 244.0
  • Bit_score: 260
  • Evalue 2.00e-66
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 59.4
  • Coverage: 244.0
  • Bit_score: 260
  • Evalue 5.60e-67
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.4
  • Coverage: 244.0
  • Bit_score: 260
  • Evalue 2.80e-66

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Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 882
GTGCGCCATCGCCAGAGCGAGCCCGTGCTCGCCGGTCCGCTCGCGCCGGGCCGGGCGCTCGTGCTCGTATCGAGCGAGGCCCGCGCGGACTGCTATCCTGCCCGGGTGCAGGCGCCGGGGCGGCAGCAGCCCTACGTGCGCCGGCCGTCCAGGCCGCGGCCACGGCCGCGGGTACCCGCGTGGATCGCGCGAGCGGGAGGATCGTCCTTGCAGCCAACCGGCTCGGCCCCGGACCTCGGCTCCGAGGTCGGCCCCTCGGCGTCCGACGGCGCCCGGGCCCCGGCCGGCGAGACGCCGGAGGAGCGCCAGGCCCGCTTCGAGGAGAGCGCGATCCCCCTCCTCGACAACCTCTACGCCGGCGCCCTGCGGCTCACCCGCAACCCGGCGGACGCCGAGGACCTGGTCCAGGAGACGTTCCTGCGCGCCTACAACGCGTTCCACCAGTTCGAACCGGGCACCAACCTCAAGGCGTGGCTGTACCGCATCCTCACCAACACCTACATCAACGCCTACCGCAAGCAGCAGCGGGGGCCGCAGTCGGTGCCCACCGAGGACGTCGACGACTTCTCGCTCTACCAGCGCATCGCCGGGGCCAACCCGGCCGGGGCCGAGACGCCCGAGGACGTGCTGCTCGAGCACATCCCCGAGGACGAGGTGCGCCAGGCGCTCGACGCCCTGCCCGAGCAGTTCCGTATGGCGGTGCTCCTGGCCGACGTCGAAGGGTTCTCGTACAAGGAGATCGCGGACATCATGGGCACCTCGATCGGGACGGTCATGTCCCGGTTGCACCGGGGCCGGCGCCAGCTGCAGAAGCGGCTGTGGGAATTTGCCGCCGACCGGGGGCTGCTCGAGGAGGGACAGGAATGGGTGCGCCCGAAGTAG
PROTEIN sequence
Length: 294
VRHRQSEPVLAGPLAPGRALVLVSSEARADCYPARVQAPGRQQPYVRRPSRPRPRPRVPAWIARAGGSSLQPTGSAPDLGSEVGPSASDGARAPAGETPEERQARFEESAIPLLDNLYAGALRLTRNPADAEDLVQETFLRAYNAFHQFEPGTNLKAWLYRILTNTYINAYRKQQRGPQSVPTEDVDDFSLYQRIAGANPAGAETPEDVLLEHIPEDEVRQALDALPEQFRMAVLLADVEGFSYKEIADIMGTSIGTVMSRLHRGRRQLQKRLWEFAADRGLLEEGQEWVRPK*