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PLM4_90_b2_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b2_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b2_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 401-450 of 558 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b2_sep16_scaffold_1074
Species: RBG_16_Deltaproteobacteria_47_11_curated (90.91%)
11 8257 bp 47.28 15.01 90.76
PLM4_90_b2_sep16_scaffold_3287
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
5 4734 bp 48.23 15.02 90.75
PLM4_90_b2_sep16_scaffold_7209
Species: BJP_IG2069_Desfulfarculales_53_13 (75%)
4 5976 bp 51.59 15.06 89.91
PLM4_90_b2_sep16_scaffold_6363
Species: RBG_13_Deltaproteobacteria_52_11b_curated (50%)
2 3467 bp 51.08 15.06 94.23
PLM4_90_b2_sep16_scaffold_4046
Species: RBG_16_Deltaproteobacteria_48_10_curated (83.33%)
6 5505 bp 48.43 15.15 94.50
PLM4_90_b2_sep16_scaffold_705
Class: Deltaproteobacteria (77.78%)
9 9495 bp 49.76 15.17 80.55
PLM4_90_b2_sep16_scaffold_23572
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 3087 bp 49.08 15.21 90.28
PLM4_90_b2_sep16_scaffold_1520
Species: RBG_16_Deltaproteobacteria_47_11_curated (63.64%)
11 11057 bp 49.29 15.22 92.17
PLM4_90_b2_sep16_scaffold_6741
Class: Deltaproteobacteria (90%)
10 6691 bp 45.97 15.24 86.80
PLM4_90_b2_sep16_scaffold_16589
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 4241 bp 45.67 15.28 81.28
PLM4_90_b2_sep16_scaffold_16139
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3073 bp 48.39 15.28 89.62
PLM4_90_b2_sep16_scaffold_6764
Class: Deltaproteobacteria (60%)
5 3365 bp 50.16 15.29 97.80
PLM4_90_b2_sep16_scaffold_4658
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
4 4036 bp 47.27 15.31 82.80
PLM4_90_b2_sep16_scaffold_3313
Class: Deltaproteobacteria (100%)
8 8752 bp 48.01 15.31 90.60
PLM4_90_b2_sep16_scaffold_15373
Class: Deltaproteobacteria (83.33%)
6 3868 bp 49.35 15.32 81.98
PLM4_90_b2_sep16_scaffold_14439
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
3 3040 bp 46.05 15.35 79.84
PLM4_90_b2_sep16_scaffold_2989
Class: Deltaproteobacteria (100%)
10 9710 bp 50.16 15.36 95.13
PLM4_90_b2_sep16_scaffold_2684
Class: Deltaproteobacteria (50%)
10 5934 bp 48.77 15.37 71.54
PLM4_90_b2_sep16_scaffold_15071
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
3 3197 bp 47.08 15.39 79.39
PLM4_90_b2_sep16_scaffold_896
Class: Deltaproteobacteria (75%)
8 8657 bp 47.68 15.40 85.53
PLM4_90_b2_sep16_scaffold_161
Class: Deltaproteobacteria (95%)
20 22373 bp 49.52 15.47 88.63
PLM4_90_b2_sep16_scaffold_464
Class: Deltaproteobacteria (66.67%)
12 12121 bp 50.58 15.51 77.22
PLM4_90_b2_sep16_scaffold_604
Species: RBG_16_Deltaproteobacteria_49_23_curated (80%)
10 10162 bp 50.70 15.51 90.31
PLM4_90_b2_sep16_scaffold_529
Species: RBG_16_Deltaproteobacteria_47_11_curated (64.29%)
14 10699 bp 46.75 15.56 75.88
PLM4_90_b2_sep16_scaffold_5443
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
4 3750 bp 44.83 15.56 88.80
PLM4_90_b2_sep16_scaffold_3632
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
6 4519 bp 48.64 15.60 80.59
PLM4_90_b2_sep16_scaffold_5294
Species: RBG_16_Deltaproteobacteria_48_10_curated (85.71%)
7 5502 bp 46.20 15.62 81.19
PLM4_90_b2_sep16_scaffold_4321
Class: Deltaproteobacteria (100%)
3 4179 bp 51.26 15.65 97.06
PLM4_90_b2_sep16_scaffold_5450
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 3747 bp 47.08 15.65 90.23
PLM4_90_b2_sep16_scaffold_3214
Class: Deltaproteobacteria (80%)
5 4778 bp 50.65 15.67 89.66
PLM4_90_b2_sep16_scaffold_192
Class: Deltaproteobacteria (100%)
10 16135 bp 48.53 15.72 88.58
PLM4_90_b2_sep16_scaffold_3463
Class: Deltaproteobacteria (57.14%)
7 5760 bp 47.76 15.76 76.51
PLM4_90_b2_sep16_scaffold_5966
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
6 4813 bp 46.79 15.77 74.98
PLM4_90_b2_sep16_scaffold_4271
Species: RBG_16_Deltaproteobacteria_47_11_curated (64.71%)
17 10838 bp 47.67 15.79 89.46
PLM4_90_b2_sep16_scaffold_3893
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 4395 bp 44.71 15.80 72.35
PLM4_90_b2_sep16_scaffold_7824
Species: RBG_16_Deltaproteobacteria_47_11_curated (53.85%)
13 8329 bp 47.46 15.83 87.35
PLM4_90_b2_sep16_scaffold_3981
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
6 5114 bp 47.54 15.84 88.17
PLM4_90_b2_sep16_scaffold_6804
Species: RBG_19FT_COMBO_Syntrophobacterales_59_10_curated (50%)
6 5067 bp 49.12 15.93 87.80
PLM4_90_b2_sep16_scaffold_5113
Species: RBG_13_Deltaproteobacteria_47_9_curated (50%)
4 3865 bp 47.37 15.95 74.44
PLM4_90_b2_sep16_scaffold_7284
Class: Deltaproteobacteria (100%)
4 3244 bp 48.74 15.95 98.21
PLM4_90_b2_sep16_scaffold_3484
Species: RBG_16_Deltaproteobacteria_47_11_curated (55.56%)
9 6785 bp 46.37 15.98 83.74
PLM4_90_b2_sep16_scaffold_3305
Species: RBG_16_Deltaproteobacteria_48_10_curated (53.85%)
13 11325 bp 47.53 15.99 80.58
PLM4_90_b2_sep16_scaffold_1385
Species: RBG_16_Deltaproteobacteria_48_10_curated (83.33%)
6 6923 bp 48.06 15.99 77.57
PLM4_90_b2_sep16_scaffold_17171
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3690 bp 45.56 16.06 87.80
PLM4_90_b2_sep16_scaffold_3896
Class: Deltaproteobacteria (62.5%)
8 6286 bp 43.06 16.08 71.92
PLM4_90_b2_sep16_scaffold_1406
Class: Deltaproteobacteria (54.55%)
11 6894 bp 47.20 16.12 75.33
PLM4_90_b2_sep16_scaffold_5242
Species: RBG_13_Deltaproteobacteria_43_22_curated (75%)
4 3816 bp 51.44 16.12 84.98
PLM4_90_b2_sep16_scaffold_1279
Class: Deltaproteobacteria (60%)
5 7174 bp 47.23 16.14 75.77
PLM4_90_b2_sep16_scaffold_4989
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 3909 bp 47.25 16.16 82.12
PLM4_90_b2_sep16_scaffold_970
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
8 8109 bp 48.29 16.20 90.75
Displaying items 401-450 of 558 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.