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PLM4_90_coex_sep16_Euryarchaeota_59_6

PLM4_90cm_coex_sep2016_Euryarchaeota_59_6
In projects: PLM4_90cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Euryarchaeota  →  Archaea

Metagenomic Context

Parent: PLM4_90cm_coex_sep2016_UNK Curated version: PLM4_90_coex_sep16_metabat_bin_28_curated

Properties

Avg. coverage: 5.70 Longest contig: 29.14 Kbp Bin length: 1.93 Mbp GC content: 59.18 %
Contigs count: 323 Features count: 2181 rRNAs count: 0 tRNAs count: 33

Genome completeness

near complete RP 22 / 55 MC: 3 BSCG 19 / 51 ASCG 32 / 38
Displaying items 151-200 of 323 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_coex_sep16_scaffold_5945
Phylum: Euryarchaeota (55.56%)
9 5722 bp 60.80 4.85 90.89
PLM4_90_coex_sep16_scaffold_836
Phylum: Euryarchaeota (61.54%)
13 14611 bp 59.98 5.71 90.85
PLM4_90_coex_sep16_scaffold_3108
Phylum: Euryarchaeota (50%)
6 5063 bp 59.65 4.68 90.84
PLM4_90_coex_sep16_scaffold_1231
Phylum: Euryarchaeota (90.91%)
11 12104 bp 60.53 5.64 90.79
PLM4_90_coex_sep16_scaffold_1857
Phylum: Euryarchaeota (50%)
6 5755 bp 56.94 5.37 90.76
PLM4_90_coex_sep16_scaffold_8743
Domain: Archaea (60%)
5 3760 bp 59.07 5.70 90.72
PLM4_90_coex_sep16_scaffold_1156
Phylum: Euryarchaeota (89.29%)
28 20317 bp 61.34 5.56 90.71
PLM4_90_coex_sep16_scaffold_5692
Phylum: Euryarchaeota (66.67%)
6 5583 bp 59.25 5.29 90.65
PLM4_90_coex_sep16_scaffold_426
Phylum: Euryarchaeota (76%)
25 23696 bp 59.54 6.13 90.58
PLM4_90_coex_sep16_scaffold_1460
Phylum: Euryarchaeota (90%)
10 6350 bp 60.61 4.94 90.57
PLM4_90_coex_sep16_scaffold_4799 7 6527 bp 59.00 4.94 90.55
PLM4_90_coex_sep16_scaffold_5999
Species: RBG_13_Euryarchaeota_57_23_curated (50%)
2 3470 bp 55.91 7.61 90.43
PLM4_90_coex_sep16_scaffold_18192
Phylum: Euryarchaeota (75%)
4 3208 bp 59.07 6.08 90.43
PLM4_90_coex_sep16_scaffold_4045
Domain: Archaea (57.14%)
7 4127 bp 59.63 5.20 90.43
PLM4_90_coex_sep16_scaffold_639
Phylum: Euryarchaeota (60%)
5 8683 bp 59.36 4.98 90.35
PLM4_90_coex_sep16_scaffold_1831
Phylum: Euryarchaeota (88.24%)
17 10433 bp 59.99 5.39 90.20
PLM4_90_coex_sep16_scaffold_14397
Phylum: Euryarchaeota (83.33%)
12 10605 bp 58.67 6.31 90.06
PLM4_90_coex_sep16_scaffold_3194
Phylum: Euryarchaeota (88.89%)
9 6433 bp 58.67 5.32 90.05
PLM4_90_coex_sep16_scaffold_7755
Species: RBG_19FT_COMBO_Euryarchaeota_56_21_curated (50%)
4 3081 bp 57.38 11.73 90.04
PLM4_90_coex_sep16_scaffold_6879
Phylum: Euryarchaeota (57.14%)
7 6561 bp 62.08 5.51 89.94
PLM4_90_coex_sep16_scaffold_18939
Phylum: Euryarchaeota (60%)
5 3906 bp 62.08 4.72 89.94
PLM4_90_coex_sep16_scaffold_6752
Species: RBG_16_Euryarchaeota_68_12_curated (50%)
2 3284 bp 60.66 6.49 89.89
PLM4_90_coex_sep16_scaffold_9344 3 4261 bp 57.90 4.79 89.84
PLM4_90_coex_sep16_scaffold_6011
Phylum: Euryarchaeota (55.56%)
9 9604 bp 58.77 6.22 89.81
PLM4_90_coex_sep16_scaffold_6288 11 8135 bp 59.37 5.46 89.76
PLM4_90_coex_sep16_scaffold_3232
Species: RBG_16_Euryarchaeota_68_12_curated (50%)
6 4565 bp 58.73 6.11 89.70
PLM4_90_coex_sep16_scaffold_2545 14 11098 bp 58.39 5.05 89.70
PLM4_90_coex_sep16_scaffold_1284
Domain: Archaea (50%)
18 14831 bp 58.54 5.81 89.59
PLM4_90_coex_sep16_scaffold_1724
Phylum: Euryarchaeota (70%)
10 8436 bp 61.63 6.21 89.54
PLM4_90_coex_sep16_scaffold_3802
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (66.67%)
3 4242 bp 58.20 4.92 89.25
PLM4_90_coex_sep16_scaffold_3247
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (83.33%)
6 4553 bp 61.26 5.67 89.22
PLM4_90_coex_sep16_scaffold_354
Species: RBG_16_Euryarchaeota_68_12_curated (50%)
16 15016 bp 60.48 4.96 89.14
PLM4_90_coex_sep16_scaffold_4022 9 7098 bp 60.64 5.37 89.14
PLM4_90_coex_sep16_scaffold_3874
Phylum: Euryarchaeota (50%)
6 4206 bp 57.75 6.24 89.09
PLM4_90_coex_sep16_scaffold_1318 11 9843 bp 60.04 5.93 89.05
PLM4_90_coex_sep16_scaffold_8122
Species: RBG_16_Euryarchaeota_62_10_curated (75%)
4 3012 bp 59.43 9.06 89.04
PLM4_90_coex_sep16_scaffold_720
Phylum: Euryarchaeota (70%)
10 8280 bp 59.28 5.92 89.02
PLM4_90_coex_sep16_scaffold_8411
Phylum: Euryarchaeota (50%)
6 2962 bp 61.72 5.57 88.93
PLM4_90_coex_sep16_scaffold_2208
Phylum: Euryarchaeota (64.29%)
14 7119 bp 61.69 5.82 88.80
PLM4_90_coex_sep16_scaffold_22262
Phylum: Euryarchaeota (83.33%)
6 3583 bp 60.68 5.07 88.67
PLM4_90_coex_sep16_scaffold_12462
Species: RBG_13_Euryarchaeota_57_23_curated (50%)
2 3362 bp 54.64 7.09 88.61
PLM4_90_coex_sep16_scaffold_1548
Phylum: Euryarchaeota (50%)
6 6205 bp 56.36 5.61 88.43
PLM4_90_coex_sep16_scaffold_7372
Species: RBG_16_Euryarchaeota_68_13_curated (50%)
4 4155 bp 57.57 6.53 88.38
PLM4_90_coex_sep16_scaffold_8346
Species: RBG_16_Euryarchaeota_68_13_curated (50%)
4 2974 bp 58.74 5.95 88.06
PLM4_90_coex_sep16_scaffold_16999 6 3878 bp 59.08 9.59 88.04
PLM4_90_coex_sep16_scaffold_946
Phylum: Euryarchaeota (77.78%)
9 8174 bp 58.76 5.45 88.01
PLM4_90_coex_sep16_scaffold_17417
Phylum: Euryarchaeota (66.67%)
6 4280 bp 56.89 9.04 87.90
PLM4_90_coex_sep16_scaffold_2333
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)
4 5247 bp 59.27 5.66 87.82
PLM4_90_coex_sep16_scaffold_7874
Species: RBG_16_Euryarchaeota_68_12_curated (50%)
6 3794 bp 58.30 5.18 87.77
PLM4_90_coex_sep16_scaffold_22313
Species: mine drainage metagenome (50%)
4 2854 bp 55.57 4.84 87.35
Displaying items 151-200 of 323 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.