ggKbase home page

PLM4_5_b1_sep16_scaffold_34_17

Organism: PLM4_5_b1_sep16_Betaproteobacteria_67_16

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38 MC: 1
Location: comp(17235..19454)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD Tax=Rhodocyclaceae RepID=UPI00036BCC9A similarity UNIREF
DB: UNIREF100
  • Identity: 71.1
  • Coverage: 678.0
  • Bit_score: 926
  • Evalue 1.60e-266
rpoD; RNA polymerase sigma factor rpoD, Sigma-70 similarity KEGG
DB: KEGG
  • Identity: 68.2
  • Coverage: 751.0
  • Bit_score: 943
  • Evalue 3.60e-272
Tax=RBG_16_Betaproteobacteria_66_20_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 81.4
  • Coverage: 762.0
  • Bit_score: 1173
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_Betaproteobacteria_66_20_curated → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2220
ATGGCCAAACCCAAGCGCAAGTCCAAGGTGAAACAGTCTCGCAAGGTTGCGAAAAAAGCCAAGCCGATCAAGGCATTGAAGAAGAAGAAGGCGGCGCGCCCCGCGCCGAAGCCGCGGCCCGCGGCGAAGAAACCCGTCAAGGCCGTCAAGCACGCCAAGGCCCCGATTGCGGCCAAGCCGCACCCCAAGGCCGATGAAAAAGCCAGGAAGCCCACGATCAAGAGCGCGAAGGCTGCGCTAGAGCAGCTCGAGGCCAAGCTGGCCGAGGGACTGAAGGCGAAAGCCGCCCGCGGCCGACCTGGGCGGAAGTCGAAGAAGGAGGAGTGGCTCGCCGCGATGGCCGAGCTGCCCAAGGAGGATGCCGAGACGCGCCGCATGCGTCTCAAGACCCTCATCAAGCTCGGCAAGGACCGCGGTTTCCTCACCTACGCCGAGATCAACGACCACCTGCCCGACGACCTGGTGGATGCCGAGCAGATCGAGGCCATCATCTCGACCTTCGGCGACATGGGCATCCAGGTCTACGACCAGGCGCCAGACCAGGAAACGCTGCTGATCACGGCCGAATCGGCCCCGGTCGCCTCCACCGACGAGGACGTCGAGGAACAGGCCGAGGCGGCGCTCTCCACGGTGGACTCGGAGTTCGGCCGCACCACCGACCCGGTGCGCATGTACATGCGCGAGATGGGCTCGGTGGAGCTGCTCACGCGCGAGGGCGAGATCGAGATCGCCAAGCGCATCGAAGAGGGCCTGCGCCACATGATCCAGGCGATCAGCGCCTGCCCGACCACGGTGCGCGAGATCCTCGACCTGGCCGACAAGGTGGAGAAGGAAGAGCTGCGCATCGACGAGGTGGTGGACGGCCTCATCGACCCCAACGCGAAGGACCAGTTCGACCCGAAAAAGGCGGAAGCCGCGACCGAGGAAGAAGAAGAGGAGCAGATCGAGGAAGAGGAAGGCGAGTCCGAGGAAGACGAGGGTGCCGCGCAATCGGCGAGCCTGCTCGCGCTGCGCGGCGAGGCGCTGGAGAAATTCACCCGCATCCGCCGCCTGTTCGAGAAGATGCTGCGTGTGCTGGAGAACAAGGGGTCCAAGGACAAGGACTACCTGCGGGTGCGCGAGCAGATCTCCAACGAGCTGATGACCATCCGCTTCACCGCGCGCACCGTCGAGCGCCTGTGCGACAGCGTGCGCAGCCTGGTGGACGACATCCGCAGCCACGAGCGCCAGATCCACGACATCTCGGTGCACAAGGCGCAGATGCCGCGGCAGCACTTCATCAAGGTGTTCGTCGGCACCGAGGGCTCCAAGCGCTGGCTGTCGGCCGAGATCAACGCCGCCCACCCCTGGAGCGAGCAGCTGGTGCGCATGGAGCCGTCGATCCTCGAGCTGCTGGGCAAGATCCAGGGCGTGCAGCAGAAGATCGGCATCCCGGTCAGGGATCTCAAGGAAATCAACAAGCAGATGTCCACCGGCGAGGCGAAGGCGCGCCGCGCCAAGCGCGAGATGACCGAGGCCAACCTGCGGCTGGTGATCTCCATCGCCAAGAAATACACCAACCGCGGCCTGCAGTTCCTCGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTGGACAAGTTCGAATACCGCCGGGGATACAAGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGGCGATCACGCGCTCGATCGCCGACCAGGCGCGCACCATCCGCATCCCGGTGCACATGATCGAGACCATCAACAAGATGAACCGCATCTCGCGCCAGATCCTGCAGGAGACCGGGCAGGAGCCCGACCCGGCGACGCTGGCGCAGAAGATGGAGATGCCGGAGGAGAAGATCCGCAAGATCCTCAAGATCTCCAAGGAGCCGATCTCCATGGAGACGCCGATCGGCGACGACGACGACTCGCACCTCGGGGACTTCATCGAGGACCAGTCCACGCTCGCGCCCAACGACGCGGCGATGTACGCATCCTTGCGCGAGGTGACCAAGGAAGTGCTGGACACGCTCACGCCGCGCGAAGCGAAGGTGCTGCGCATGCGCTTCGGCATCGAGATGAACACCGACCACACGCTGGAGGAGGTCGGCAAGCAATTCGACGTCACGCGTGAGCGCATCCGCCAGATCGAGGCCAAGGCGCTGAGGAAGCTGCGGCATCCCTCGCGCTCCGAGCGGTTGAAGAGCTTCCTGGATCAGGAAGGGTAA
PROTEIN sequence
Length: 740
MAKPKRKSKVKQSRKVAKKAKPIKALKKKKAARPAPKPRPAAKKPVKAVKHAKAPIAAKPHPKADEKARKPTIKSAKAALEQLEAKLAEGLKAKAARGRPGRKSKKEEWLAAMAELPKEDAETRRMRLKTLIKLGKDRGFLTYAEINDHLPDDLVDAEQIEAIISTFGDMGIQVYDQAPDQETLLITAESAPVASTDEDVEEQAEAALSTVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEEGLRHMIQAISACPTTVREILDLADKVEKEELRIDEVVDGLIDPNAKDQFDPKKAEAATEEEEEEQIEEEEGESEEDEGAAQSASLLALRGEALEKFTRIRRLFEKMLRVLENKGSKDKDYLRVREQISNELMTIRFTARTVERLCDSVRSLVDDIRSHERQIHDISVHKAQMPRQHFIKVFVGTEGSKRWLSAEINAAHPWSEQLVRMEPSILELLGKIQGVQQKIGIPVRDLKEINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGQEPDPATLAQKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDQSTLAPNDAAMYASLREVTKEVLDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERLKSFLDQEG*