ggKbase home page

PLM4_5_b1_sep16_scaffold_3657_8

Organism: PLM4_5_b1_sep16_Eisenbacteria_68_23

near complete RP 48 / 55 MC: 2 BSCG 48 / 51 MC: 3 ASCG 10 / 38 MC: 1
Location: comp(8071..8652)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Mucilaginibacter paludis genus=Mucilaginibacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin similarity UNIREF
DB: UNIREF100
  • Identity: 72.0
  • Coverage: 150.0
  • Bit_score: 219
  • Evalue 2.00e-54
RNA polymerase subunit sigma-24 similarity KEGG
DB: KEGG
  • Identity: 42.6
  • Coverage: 190.0
  • Bit_score: 157
  • Evalue 2.60e-36
Tax=RBG_16_RIF_WS3X_71_46_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 69.7
  • Coverage: 185.0
  • Bit_score: 261
  • Evalue 8.30e-67

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_RIF_WS3X_71_46_curated → RIF-WS3X → Bacteria

Sequences

DNA sequence
Length: 582
GTGAGCAGCGTCGAAGCGGGCCTGGTCAGGCGGTGCCTGGCGGGTGACGAAAAGGCCTACCGGGAACTGGTCGAAATGTACCAGGGGCAGGTCTTCTCCCTCGCCCTCCGCATGGTCCGCCGCCGCGAAGACGCTGAAGACGCAACCCAGGAGACGTTCGTCCGGATGTTCCGGGCACTGGAGCGGTACGACACCAACCGTCCGTTCGCCGCCTGGCTCATGACCATTGCATCGCGGTTGTGCATCGATCAGATCCGGCGTCGTCGCGTGAATCCGGTCTCGCTCACGCAGACGGAACCGGGCAGCGACGAAGCCTACGAAATGGACGTCGAGGATCCGGGACCCGGACCCGACGAGATCACGAGTCACTCCGAAGAGGAGCGCAGAGGCAACGAACTCATCCAGTCCCTGCCGCCGCACTATCGGGTGGTGGTGGTGCTCCGGCACCTTCAGGACCTGTCGTACGAGGAGATTGCAGAAGCATTGAATCTTCCACTCGGCACCGTGAAGGCGCGCATCCATCGCGCGCGCGAGATCCTCAAGCTCCGGCTCGAAGAGCGCGGGAGGGAGGCGCAGTCATGA
PROTEIN sequence
Length: 194
VSSVEAGLVRRCLAGDEKAYRELVEMYQGQVFSLALRMVRRREDAEDATQETFVRMFRALERYDTNRPFAAWLMTIASRLCIDQIRRRRVNPVSLTQTEPGSDEAYEMDVEDPGPGPDEITSHSEEERRGNELIQSLPPHYRVVVVLRHLQDLSYEEIAEALNLPLGTVKARIHRAREILKLRLEERGREAQS*