ggKbase home page

PLM4_5_b1_sep16_scaffold_3668_4

Organism: PLM4_5_b1_sep16_Eisenbacteria_68_23

near complete RP 48 / 55 MC: 2 BSCG 48 / 51 MC: 3 ASCG 10 / 38 MC: 1
Location: comp(3548..6835)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-54-dependent transcriptional response regulator Tax=Geobacter RepID=Q39Y76_GEOMG bin=16ft_combo_ws3_JS1 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade similarity UNIREF
DB: UNIREF100
  • Identity: 77.6
  • Coverage: 469.0
  • Bit_score: 744
  • Evalue 1.00e-211
sigma-54-dependent transcriptional response regulator similarity KEGG
DB: KEGG
  • Identity: 47.8
  • Coverage: 464.0
  • Bit_score: 411
  • Evalue 7.40e-112
Tax=RBG_16_RIF_WS3X_71_46_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 77.6
  • Coverage: 469.0
  • Bit_score: 744
  • Evalue 1.40e-211

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_RIF_WS3X_71_46_curated → RIF-WS3X → Bacteria

Sequences

DNA sequence
Length: 3288
ATGAGCACCGAACACGACCGTGACCTCCGCGACCTCCTCCGACGTGTGGACGAGGTGCGCGGGCTGGCGCAGCGTGCCGAGACCGGCACGACGCTCGAGGCGGACGATCCCGAATCGCTCGCCCGGGTGCTCGAGCAGCTGGTCGAGGAGCTGGAGCGCAGCCATCGCCGCCTGATCGAGACCAACGTGCAGCTGGTCTCGCTGCGCGAGGTGGCGAGCACGCTCATCAGCACCCTCGACGGCGGCGAGACCACCCGGACGGTGACGCGCTACCTGGCGCGCGCGTTCGACTTCGACGACGCGTTCGTCCTGCTGCTCGATCCCGAGCGCGGGGTGCTGTCCGGCACCTGGACGCACCTGGCGGGCGGCCGCGAGCAGAGCCACCGGCTCGAGATCCCGCTGCTCGGCGATCACGGCGCGGTGTCGCGCGCGGTGTGGCTCAACCGCACCCTGCGCCTCCACGACCTGACCCGCCATCCGGCGCTCGCGCTGCCGCACGGCCATCCGCTCGAGGACGTGCTGGCCGGGCTCGGCTCGATGGTGTGCGTGCCGCTCCAGCGCAGCCACGCGGTGCTGCCGAGCGGGGAGACCCACGAGCTGTGCGGGGCGCGCTGCATCCTCGGCGACGTCGAGAGCATCGCGCCGCCGCCCGGCGCCGCGGCCGACGGCTGGGCGCTCGACCGCGACGAACGGCAGCGCCAGTGCCTGTCGTGCGAGGTGCTGCCGCTGCTGGGCGTGATCGGCGCCGCGCGCGGACCGGCGCGCCCGGCGCTCGGACCGCCCGACGTGACGCTGATCGAATCGATCGCCCTGTCGGTCGCACCGATGGTCGAGAACGCGCGGCTCTACCAGGAGCTGCGCCGCAGCGAGCGGTTCCGGATCCACGTGCTCGACAGCATGGCGAGCGCGCTGGTCGCCGTGAACCTGTCGGCCGAGGTGCTGACCTTCAACCGCGCGGCCCAGGAGATGCTCGGCTACGAGGAGGGCGAGGTCACCGGCAAGCCGATCGGGGCGCTGCTCGGCAGCGACACCGAGGAGCTGGTGCGCGCGACCATCGAACAGGGCCGCGAGGCGGTGCGCGAGGAGATCACGCTGCGGGGCCGCGACGGCACGCCGCTGCCGGTCAGCCTCACCACCTCGCTGCTGCGCGACGAGCGCCGCGCGATCTACGGCGCGATCGCCACGTTCGTCGATCTCACCCCGCTCAAGCGCGCCGAGGAGCACGCGCGTTCCCAGGACCGCCTGGCCGCGCTCGGCCGCTTCACCTCGAGCGTGGCGCACGAGATCCGCAATCCGCTGACGGGGATCGGCGCGGGCGTCCAGTACCCAGGACCTGTTCGACATCACCCATCCGCGGCGCCTGCAGTTCGAGCCCGCGCCGCTCGAGACCGCGGCGAAGCGGGCGCTCCAGTCGCTCGAGGCGCTGCTCGCCGAGCGCGGGGTGACCGCCGAGGTCACGGTCGCGTCCGGCACGCCGCCGGTCGCGTACGACGCCGACCAGCTCCAGCAGGTGTTCATCAACCTGGTCAAGAACGCGGCCGAGGCGTCGCCATCCGGCTCCTCGGTCCGCATCCAGATCGACCCCGCACCGCCGCGTGGCCGGCCCGGCCGCGCGCGCGCGGCGCCCGGCGTGATCGCACGGGTCCGCGACGCGGGGGAGGGGATTCCCGAAACGCATCTCGCCACGTTGTTCGAGCCGTTCTTCACCACCAAGCCGGGTGGCACCGGCCTGGGCCTCTATATCTGCCACGACATCGTCAAGCGCCACGGGGGTGCTCTGACGGTTCAGAGCGAACCCGGACGCGGCAGCACATTCATCCTCGAGCTGCCACTCGACCCCGACGGAGGAACGTCATGAGCAAGGCCAACATCCTGGTCGTCGACGACCAGGATTCCATCCGCCACTTCGTGGCCAAGGCGCTCGAGGACGAGGGCTACCAGGTCCGCTCGGCCGCGAGTGTGCGCGAAGCACGCGCCGCGATCGAAAAAGACATGCCGGACCTGGCGCTGCTCGATCTCAAGCTGCCCGACGGCACCGGGCTCGAGCTGCTGCGCGAGATCAAGAAGGTCCAGCCCGAAGTCACCGTGATCCTGATGACCGCATTCGGCGAGCTCGAGACCGCGGTCGAGGCGATGTCGAGTGGCGCGTTCTGGTTCGTCAAGAAGCCGTTCCAGAACGAGGAGCTGCTGGCGCTGGTCGGACGCGGTCTCGAGTCCCAGCGGCTGTGGATCGAGCTGCGGCGCCTGCGCAACCAGGCGTTCTCGAACGAGGACTATCTCCATTCGCAGGCCGCCTCGATGCACGAGGTGTATGCGATCGCCGAGCAGGTCGCGCGCGGCGACACCACCAGCGTGCTGATCGAGGGCGAGAGCGGCACCGGCAAGGAGTACTTCGCCAACCTGATCCACCGGATGAGCGCCCGTCACGACAAGCCGTTCGTCGAGATCAACTGCGCGGCGATCCCGCGCGAGCTGCTCGAGAGCGAGCTGTTCGGTCACGAGAAGGGCGCGTTCACCGATGCCCGCGCGCAGAAGCTCGGGCTCATGGAGCTGGCGAACAACGGCACGCTGTTCCTCGACGAGATCGGGGAGATGAGCCCGATGCTCCAGGTCAAGCTGCTGCGGGTGCTCGAGCGCCGCACGTTCAAGCGGGTCGGCGGCACCAAGGACATCACCGTCAGCCTGCGCGTCATCTCGGCCACCAATCAGGACCTCGAGCGCATGGTGGCGGAGGGCGGGTTCCGCGAGGATCTCTACTACCGGCTCAGGGTCGTGCCGCTCTACGTGCCGCCGCTCCGCGACCGCCACGAGGACGTGCTCCCGCTCGCGCGGCTGTTCATGGACCGGTTCGTGAAGCAGTTCAAGAAGTCGTTCAAGGAGATCGCGCCGGCCGCCCAGCAGGTGCTGCTCGACTATCCGTGGCCCGGCAACATCCGCGAGCTCAAGAACCTGTTCGAGCGCACGGTGCTGCTCGAGAACGCCGAGATCCTCGAGCCCCGCCACCTGAAGCTGGCGGCGCGCGCGCGGCCCGGCCAGGAGGTCACGTTCGGCCAGCGCATCGACGACCTGATGCAGAGCGCGATCCCGGCCGCCGGGATCCCGTTCGAAACGCTGGTCGAGGAGCTGGAGCGCGCCTTGATCGTCAAGGCCTCGTATGCTACCAAGTGGAATCAGAGTCGTACCGCGGAGCTGCTGCAGCTGAAGCGCGACAAGCTCCGCTACCGCATGAAGCTCTTCCAGCTCGACGGTCCGCGCGATGCGGGCGGCGAGGAGGAGCGCGCGGCCTGA
PROTEIN sequence
Length: 1096
MSTEHDRDLRDLLRRVDEVRGLAQRAETGTTLEADDPESLARVLEQLVEELERSHRRLIETNVQLVSLREVASTLISTLDGGETTRTVTRYLARAFDFDDAFVLLLDPERGVLSGTWTHLAGGREQSHRLEIPLLGDHGAVSRAVWLNRTLRLHDLTRHPALALPHGHPLEDVLAGLGSMVCVPLQRSHAVLPSGETHELCGARCILGDVESIAPPPGAAADGWALDRDERQRQCLSCEVLPLLGVIGAARGPARPALGPPDVTLIESIALSVAPMVENARLYQELRRSERFRIHVLDSMASALVAVNLSAEVLTFNRAAQEMLGYEEGEVTGKPIGALLGSDTEELVRATIEQGREAVREEITLRGRDGTPLPVSLTTSLLRDERRAIYGAIATFVDLTPLKRAEEHARSQDRLAALGRFTSSVAHEIRNPLTGIGAGVQYPGPVRHHPSAAPAVRARAARDRGEAGAPVARGAARRARGDRRGHGRVRHAAGRVRRRPAPAGVHQPGQERGRGVAIRLLGPHPDRPRTAAWPARPRARGARRDRTGPRRGGGDSRNASRHVVRAVLHHQAGWHRPGPLYLPRHRQAPRGCSDGSERTRTRQHIHPRAATRPRRRNVMSKANILVVDDQDSIRHFVAKALEDEGYQVRSAASVREARAAIEKDMPDLALLDLKLPDGTGLELLREIKKVQPEVTVILMTAFGELETAVEAMSSGAFWFVKKPFQNEELLALVGRGLESQRLWIELRRLRNQAFSNEDYLHSQAASMHEVYAIAEQVARGDTTSVLIEGESGTGKEYFANLIHRMSARHDKPFVEINCAAIPRELLESELFGHEKGAFTDARAQKLGLMELANNGTLFLDEIGEMSPMLQVKLLRVLERRTFKRVGGTKDITVSLRVISATNQDLERMVAEGGFREDLYYRLRVVPLYVPPLRDRHEDVLPLARLFMDRFVKQFKKSFKEIAPAAQQVLLDYPWPGNIRELKNLFERTVLLENAEILEPRHLKLAARARPGQEVTFGQRIDDLMQSAIPAAGIPFETLVEELERALIVKASYATKWNQSRTAELLQLKRDKLRYRMKLFQLDGPRDAGGEEERAA*