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PLM4_32_b1_sep16_scaffold_431

Search features with annotation key words

Displaying items 31-49 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_431_29
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30678..31622)
DNA (945bp) protein (315aa)
ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
Pseudouridine synthase Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWV4_SYNAS
PLM4_32_b1_sep16_scaffold_431_30
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(31636..32142)
DNA (507bp) protein (169aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
lspA; lipoprotein signal peptidase (EC:3.4.23.36)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_431_31
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(32144..32518)
DNA (375bp) protein (125aa)
DksA/TraR C4-type zinc finger protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Streptomyces clavuligerus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_Zixibacteria_43_9_curated
PLM4_32_b1_sep16_scaffold_431_32
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

comp(32607..35765)
DNA (3159bp) protein (1053aa)
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase bin=GWC2_Ignavibacteria_56_12 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
Tax=RBG_16_Zixibacteria_50_21_curated
PLM4_32_b1_sep16_scaffold_431_33
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(35762..36595)
DNA (834bp) protein (278aa)
purine nucleoside phosphorylase I (EC:2.4.2.1)
Purine nucleoside phosphorylase Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QX39_ISOPI bin=16ft_combo_ws3_JS1 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_431_34
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

comp(36763..37581)
DNA (819bp) protein (273aa)
cell-division initiation protein; K04074 cell division initiation protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
DivIVA domain-containing protein
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM4_32_b1_sep16_scaffold_431_35
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(37825..38517)
DNA (693bp) protein (231aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54991.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
yggS; hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
pyridoxal phosphate enzyme, YggS family
PLM4_32_b1_sep16_scaffold_431_36
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

38926..41694
DNA (2769bp) protein (923aa)
Ribonucleoside-diphosphate reductase class II {ECO:0000313|EMBL:CDM65816.1}; EC=1.17.4.- {ECO:0000313|EMBL:CDM65816.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ribonucleoside-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
nrdA; Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to ATP-cone domains
PLM4_32_b1_sep16_scaffold_431_37
BJP_IG2102_PER_44_74, Peregrinibacteria, Bacteria

Not on your lists

41743..42768
DNA (1026bp) protein (342aa)
ribonucleotide-diphosphate reductase small chain (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
nrdB; Ribonucleotide reductase beta subunit
Tax=BJP_IG2102_PER_44_74
PLM4_32_b1_sep16_scaffold_431_38
R_NC10_66_22, NC10, Bacteria

Not on your lists

42855..43781
DNA (927bp) protein (309aa)
Putative ribonuclease Tax=Gordonia malaquae NBRC 108250 RepID=M3UZ86_9ACTO
rbn; ribonuclease BN
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_32_b1_sep16_scaffold_431_39
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

43782..45065
DNA (1284bp) protein (428aa)
NADH dehydrogenase (ubiquinone) (EC:1.6.5.3)
NADH dehydrogenase (Ubiquinone) {ECO:0000313|EMBL:AFZ33025.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AFZ33025.1};; Flags: Precursor;; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 7428.;"
NADH dehydrogenase (Ubiquinone) Tax=Gloeocapsa sp. PCC 7428 RepID=K9XK70_9CHRO
PLM4_32_b1_sep16_scaffold_431_40
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45075..45848
DNA (774bp) protein (258aa)
hypothetical protein Tax=Geitlerinema sp. PCC 7105 RepID=UPI00034C8073
HAD-superfamily subfamily IIA hydrolase, TIGR01458 {ECO:0000313|EMBL:EIJ41147.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
HAD family hydrolase
PLM4_32_b1_sep16_scaffold_431_41
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45859..46890)
DNA (1032bp) protein (344aa)
Histone deacetylase family protein Tax=Smithella sp. ME-1 RepID=V4F8P3_9DELT
histone deacetylase family protein
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM4_32_b1_sep16_scaffold_431_42
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

comp(47019..48983)
DNA (1965bp) protein (655aa)
Acetyl-coenzyme A synthetase bin=GWF2_OP3_43_52 species=Coraliomargarita akajimensis genus=Coraliomargarita taxon_order=Puniceicoccales taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
acetate/CoA ligase
Tax=GWF2_WOR_2_43_52_curated
PLM4_32_b1_sep16_scaffold_431_43
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49095..50357
DNA (1263bp) protein (421aa)
Major facilitator superfamily MFS_1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LNW9_SYNFM
major facilitator transporter
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_32_b1_sep16_scaffold_431_44
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50354..50938
DNA (585bp) protein (195aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U368_MYXSD
pyridoxamine 5'-phosphate oxidase
PLM4_32_b1_sep16_scaffold_431_45
unknown

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51078..51518
DNA (441bp) protein (147aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_431_46
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

51570..52751
DNA (1182bp) protein (394aa)
NAD(FAD)-utilizing dehydrogenase Tax=Blastopirellula marina DSM 3645 RepID=A3ZUI3_9PLAN
NAD(FAD)-utilizing dehydrogenase {ECO:0000313|EMBL:EAQ79893.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_431_47
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(52762..53721)
DNA (960bp) protein (320aa)
Serine/threonine protein kinase bin=GWA2_Ignavibacteria_55_11 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
serine/threonine protein kinase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
Displaying items 31-49 of 49 in total

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