ggKbase home page

PLM4_32_b1_sep16_scaffold_27188_1

Organism: PLM4_32_b1_sep16_Deltaproteobacteria_54_7

near complete RP 41 / 55 MC: 4 BSCG 43 / 51 MC: 2 ASCG 10 / 38 MC: 2
Location: comp(9..1754)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor bin=GWD2_Deltaproteobacteria_55_8 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 82.2
  • Coverage: 557.0
  • Bit_score: 901
  • Evalue 2.60e-259
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 59.2
  • Coverage: 603.0
  • Bit_score: 671
  • Evalue 1.60e-190
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 82.0
  • Coverage: 582.0
  • Bit_score: 931
  • Evalue 5.60e-268

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Deltaproteobacteria_60_19 → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1746
ATGAAGGAGGTCAAAAAGCTCATCGATTTGGGCAAGGAAAAAGGCTACCTGACTTATGACGACGTGAACGACATGCTGCCAGCGGAAGTGGTCTCGCCGGATCAGATTGACGATGTCATGTCCATCTTTGGCGAGATGGACATCGAAGTCGTCGATGCCAACCAGCGTGTTTCTTTGGGAGGTGCTGGCGAAGATCTTGTCGAAGATGAGGAGGAAGAAAAGGAGGTCGAGTCCGACATCGATGGCGACATGGTGGGGAAGACCGGTGACCCCGTACGCATGTACCTGCGCGAAATGGGAACCGTCTCTTTGTTGAGCCGCGAGGGTGAGGTCGAGATTGCCAAGAAGATTGAACAGGGCGAAAAACAGGTTATCGAAGAGGTCCTCTCAAGCCCGCTGGCGCTGCGCTACGTTCTGGATCTTGGCGAAAAATTGGCGCTGCGTGAGATTCGGGTCAGAGAAATTATCAAAGACGGGGACGAGGATGCCGAATATCTCGAAGACGAAGAGGTTTATGAAAAGCGGCTCTTAGAGCAAATCGCAAGGATTCGTCGCACGGCCAACGAAACGGAAAGGATTAAAAGGCAGTTGGATGGCAAACGCGTTTCAACGCAGCGGCGTCACTCGCTCCTTCAAAACCTGGGCAAATACCAAGATAAGATCGTCGGTGGACTCAAAGCGCTACAGCTCAATCGTAGGCAGACCGAAGCCATCGTTGACGGTTTGAAGAGGGCCATGGACCGGATGCAAACGCTGGAAAGAAGAGTTAAGGATTTTGAGCAGAAAACCGGCAAGGCGGCGCCGGATATAATGAAGCTTGTTTCAGGAGTAAACGGTCGCAGAAAGGATTGGCAGCGCCTCATCGGCTCGCTTCGCATGGGACATGATGCGATCTTGACCATGGCGGAAGAAATCAAAAATGCGCGGCGCGACATCCGCCACATCGAAAAAGATCTCGAGATGCCGGCTGAAGAAATCAAGCGTCGCGTTTGGTCGATTATTGAGGGTGAGACCCGGGCCAACTTGGCCAAGAAGGAACTGATCGAGGCCAACCTTAGACTAGTTGTCAGCATTGCGAAGAAATATACGAACCGTGGGCTTCAATTCTTGGACTTGATTCAAGAGGGCAATATCGGCTTGATGAAGGCAGTGGACAAGTTCGAATATCAGCGGGGGTACAAGTTCTCTACCTATGCGACTTGGTGGATCCGCCAAGCCATCACACGAGCCATTGCGGACCAGGCTCGAACCATTCGCATCCCGGTACACATGATCGAGACGATTAATAAATTGATCCGTACTTCTCGATATCTGGTTCAAGAAATCGGACGGGAGCCAACGCCGGAAGAGATCGCCAGCAAAATGGAGATCCCTTTAGATAAGGTGCGAAAGGTTCTCAAAATAGCAAAGGAGCCGATTTCGCTTGAAACCCCGGTCGGCGAGGAGGAAGATAGTCATCTCGGCGATTTTATCGAAGACAAACGGATCATTACGCCCGCAGACGCGGTGGTGAACATCAACCTTCAAGAACAAACACGAAAAGTCTTGGCAACACTGACGCCGCGCGAAGAGCAAGTATTGCGAATGCGTTTCGGCATCGGCGAAAAATCGGATCACACCCTCGAGGAGGTGGGTCAGAAGTTCACCGTTACGCGCGAACGTATTCGGCAGATCGAGGCCAAGGCGTTGCGCAAACTCAGACACCCCAGCCGCAGTAAACGGCTCAAAAGCTTCATGGAAAGCTAG
PROTEIN sequence
Length: 582
MKEVKKLIDLGKEKGYLTYDDVNDMLPAEVVSPDQIDDVMSIFGEMDIEVVDANQRVSLGGAGEDLVEDEEEEKEVESDIDGDMVGKTGDPVRMYLREMGTVSLLSREGEVEIAKKIEQGEKQVIEEVLSSPLALRYVLDLGEKLALREIRVREIIKDGDEDAEYLEDEEVYEKRLLEQIARIRRTANETERIKRQLDGKRVSTQRRHSLLQNLGKYQDKIVGGLKALQLNRRQTEAIVDGLKRAMDRMQTLERRVKDFEQKTGKAAPDIMKLVSGVNGRRKDWQRLIGSLRMGHDAILTMAEEIKNARRDIRHIEKDLEMPAEEIKRRVWSIIEGETRANLAKKELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIASKMEIPLDKVRKVLKIAKEPISLETPVGEEEDSHLGDFIEDKRIITPADAVVNINLQEQTRKVLATLTPREEQVLRMRFGIGEKSDHTLEEVGQKFTVTRERIRQIEAKALRKLRHPSRSKRLKSFMES*