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PLM4_65_coex_sep16_Deltaproteobacteria_Geobacteraceae_54_17

PLM4_65cm_coex_sep2016_Geobacter_54_17
In projects: PLM4_65cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Geobacter  →  Desulfuromonadales  →  Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 201-250 of 454 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_65_coex_sep16_scaffold_12407
Genus: Geobacter (50%)
4 4586 bp 59.55 16.26 88.84
PLM4_65_coex_sep16_scaffold_25928
Species: Geobacter uraniireducens (100%)
3 4597 bp 51.64 18.73 96.06
PLM4_65_coex_sep16_scaffold_12195
Genus: Geobacter (100%)
3 4640 bp 59.07 16.55 79.53
PLM4_65_coex_sep16_scaffold_12190
Genus: Geobacter (71.43%)
7 4641 bp 53.80 13.70 89.40
PLM4_65_coex_sep16_scaffold_11932
Species: Geobacter uraniireducens (80%)
5 4697 bp 52.97 16.77 83.41
PLM4_65_coex_sep16_scaffold_26095
Species: RBG_16_Deltaproteobacteria_50_11_curated (50%)
4 4698 bp 53.62 15.93 81.23
PLM4_65_coex_sep16_scaffold_17391
Genus: Geobacter (80%)
5 4703 bp 56.26 10.65 93.90
PLM4_65_coex_sep16_scaffold_24903
Class: Deltaproteobacteria (60%)
5 4826 bp 56.17 17.22 87.59
PLM4_65_coex_sep16_scaffold_11299
Genus: Geobacter (50%)
6 4854 bp 57.21 14.59 85.85
PLM4_65_coex_sep16_scaffold_15539
Domain: Bacteria (75%)
4 4858 bp 47.04 11.64 76.95
PLM4_65_coex_sep16_scaffold_11069
Genus: Geobacter (100%)
6 4916 bp 54.74 13.76 93.80
PLM4_65_coex_sep16_scaffold_37206
Genus: Geobacter (80%)
5 4934 bp 59.16 16.05 91.75
PLM4_65_coex_sep16_scaffold_10868
Class: Deltaproteobacteria (60%)
10 4970 bp 53.80 19.86 82.58
PLM4_65_coex_sep16_scaffold_12946
Genus: Geobacter (66.67%)
6 4978 bp 54.34 16.87 91.84
PLM4_65_coex_sep16_scaffold_32568
Species: Geoalkalibacter ferrihydriticus (50%)
10 4992 bp 56.01 21.60 100.96
PLM4_65_coex_sep16_scaffold_10695
Species: Geobacter uraniireducens (50%)
4 5015 bp 54.36 15.79 86.08
PLM4_65_coex_sep16_scaffold_10677
Species: Pelobacter propionicus (60%)
5 5021 bp 58.12 13.00 90.04
PLM4_65_coex_sep16_scaffold_10633
Species: Geobacter uraniireducens (75%)
4 5031 bp 56.63 16.13 84.73
PLM4_65_coex_sep16_scaffold_10589
Domain: Bacteria (57.14%)
7 5044 bp 52.66 15.23 74.58
PLM4_65_coex_sep16_scaffold_19708
Species: Geobacter uraniireducens (75%)
4 5044 bp 53.03 15.26 93.74
PLM4_65_coex_sep16_scaffold_21173
Genus: Geobacter (62.5%)
8 5053 bp 50.07 14.61 65.37
PLM4_65_coex_sep16_scaffold_10427
Class: Deltaproteobacteria (85.71%)
7 5088 bp 55.31 17.04 87.62
PLM4_65_coex_sep16_scaffold_29879
Species: Geobacter uraniireducens (66.67%)
6 5091 bp 57.14 16.38 90.45
PLM4_65_coex_sep16_scaffold_13085
Class: Deltaproteobacteria (85.71%)
7 5203 bp 55.22 17.70 92.02
PLM4_65_coex_sep16_scaffold_21783
Species: Geobacter uraniireducens (62.5%)
8 5209 bp 56.34 18.98 91.34
PLM4_65_coex_sep16_scaffold_9983
Genus: Geobacter (100%)
3 5212 bp 53.09 22.28 93.99
PLM4_65_coex_sep16_scaffold_9880
Species: Geobacter uraniireducens (80%)
5 5244 bp 54.71 15.19 94.05
PLM4_65_coex_sep16_scaffold_12230
Genus: Geobacter (80%)
5 5245 bp 53.52 15.99 81.56
PLM4_65_coex_sep16_scaffold_30490
Genus: Geobacter (75%)
4 5253 bp 55.70 14.48 92.00
PLM4_65_coex_sep16_scaffold_9852
Genus: Geobacter (50%)
6 5253 bp 58.69 18.56 98.12
PLM4_65_coex_sep16_scaffold_13607
Class: Deltaproteobacteria (85.71%)
7 5297 bp 55.64 15.69 88.35
PLM4_65_coex_sep16_scaffold_18280
Species: GWC2_Geobacteraceae_55_20_curated (66.67%)
3 5348 bp 55.87 19.69 96.60
PLM4_65_coex_sep16_scaffold_19798
Class: Deltaproteobacteria (75%)
8 5349 bp 54.10 11.69 89.74
PLM4_65_coex_sep16_scaffold_9460
Class: Deltaproteobacteria (80%)
5 5386 bp 54.99 15.99 88.62
PLM4_65_coex_sep16_scaffold_9263
Species: Geobacter uraniireducens (66.67%)
3 5442 bp 56.80 16.23 90.96
PLM4_65_coex_sep16_scaffold_9223
Species: Geobacter uraniireducens (100%)
4 5454 bp 53.26 17.96 84.71
PLM4_65_coex_sep16_scaffold_14374
Genus: Geobacter (62.5%)
8 5461 bp 55.14 13.93 86.80
PLM4_65_coex_sep16_scaffold_19038
Genus: Geobacter (62.5%)
8 5493 bp 52.98 16.14 89.73
PLM4_65_coex_sep16_scaffold_24676
Species: Pelobacter propionicus (66.67%)
6 5524 bp 53.71 11.89 89.77
PLM4_65_coex_sep16_scaffold_17816
Genus: Geobacter (100%)
7 5535 bp 50.73 15.93 86.78
PLM4_65_coex_sep16_scaffold_24193
Class: Deltaproteobacteria (90%)
10 5538 bp 49.73 15.06 72.10
PLM4_65_coex_sep16_scaffold_26117
Genus: Geobacter (85.71%)
7 5547 bp 56.55 16.31 92.10
PLM4_65_coex_sep16_scaffold_8924
Class: Deltaproteobacteria (62.5%)
8 5561 bp 49.54 15.32 64.68
PLM4_65_coex_sep16_scaffold_14324
Species: GWC2_Geobacteraceae_55_20_curated (50%)
6 5617 bp 57.75 14.39 94.96
PLM4_65_coex_sep16_scaffold_15570
Domain: Bacteria (75%)
8 5628 bp 53.77 15.88 74.93
PLM4_65_coex_sep16_scaffold_12947
Genus: Geobacter (66.67%)
3 5722 bp 57.48 15.65 86.35
PLM4_65_coex_sep16_scaffold_18237
Genus: Geobacter (50%)
6 5740 bp 49.84 19.91 77.51
PLM4_65_coex_sep16_scaffold_8419
Domain: Bacteria (80%)
5 5761 bp 54.16 12.78 89.93
PLM4_65_coex_sep16_scaffold_14644
Species: Pelobacter propionicus (100%)
6 5866 bp 58.80 26.72 94.41
PLM4_65_coex_sep16_scaffold_17392
Genus: Geobacter (50%)
10 5899 bp 55.67 13.60 76.44
Displaying items 201-250 of 454 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.