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PLM4_65_coex_sep16_scaffold_11032_2

Organism: PLM4_65_coex_sep16_Liptonbacteria_48_7

partial RP 36 / 55 MC: 2 BSCG 39 / 51 MC: 1 ASCG 10 / 38
Location: 920..1459

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete similarity UNIREF
DB: UNIREF100
  • Identity: 49.7
  • Coverage: 179.0
  • Bit_score: 174
  • Evalue 6.70e-41
ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 37.0
  • Coverage: 173.0
  • Bit_score: 127
  • Evalue 2.70e-27
Tax=RIFCSPLOWO2_01_FULL_OD1_56_20_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 56.8
  • Coverage: 176.0
  • Bit_score: 203
  • Evalue 2.50e-49

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Taxonomy

R_OD1_56_20 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 540
ATGTTAGAAGGTGAAAGGCAAATTATAAAACAGGCCAAGGATGGCGAAAAGGACGCTTTCGGGCTTCTCTACGACCATTATCAGCCCCAGATATACCGCTTTGTGCTCTTGAAGGTGGGCAAGAAGGAAGAGGCGGAAGATATAACCCACCAGGTGTTCCTGGCGGCTTATGAAAAGATGGGAGGATACGCCGACGAAGGCCACCCCTTTTCAAGCTGGCTTTATGAGATTGCCAGGAATCGGGTGACTGACCACTATCGCGCGGCAAAAGCGGATTTCCCCTTGCCCGAGACGGAATCGGAAATATTCGCGGTTTCGGCGGGGTTGCCGGATATGGTGGATGAACATTTTGACATGGAAAAAGTGAGAGGCGCGCTCCTCACCCTACGCCCGGAATATCAAGACGTAATAATTATGCGTTTCGTGGAAGAACTTTCTCTCCAGGAGGCGGCAGATAATCTGGGTAAATCGGTAGGGGCGGTGAAGCTTCTGCAATACCGCGCCATTCAGGCTTTGCGGAACATAATAGATTTAAGCTGA
PROTEIN sequence
Length: 180
MLEGERQIIKQAKDGEKDAFGLLYDHYQPQIYRFVLLKVGKKEEAEDITHQVFLAAYEKMGGYADEGHPFSSWLYEIARNRVTDHYRAAKADFPLPETESEIFAVSAGLPDMVDEHFDMEKVRGALLTLRPEYQDVIIMRFVEELSLQEAADNLGKSVGAVKLLQYRAIQALRNIIDLS*