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PLM3-1_170_b2_sep16_scaffold_3685

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_3685_1
unknown

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224..358
DNA (135bp) protein (45aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3685_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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483..1265
DNA (783bp) protein (261aa)
aroGFH; 3-deoxy-7-phosphoheptulonate synthase (EC:4.1.2.13 2.5.1.54)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase {ECO:0000256|HAMAP-Rule:MF_00960}; Short=ADH synthase {ECO:0000256|HAMAP-Rule:MF_00960};; Short=ADHS {ECO:0000256|HAMAP-Rule:MF_00960};; Short=ADTH synthase {ECO:0000256|HAMAP-Rule:MF_00960};; EC=2.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00960};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN09_NITGG
PLM3-1_170_b2_sep16_scaffold_3685_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1258..2331
DNA (1074bp) protein (358aa)
aroB; 3-dehydroquinate synthase (EC:1.-.-.- 4.2.3.4)
3-dehydroquinate synthase {ECO:0000313|EMBL:AFU58555.1}; EC=1.-.-.- {ECO:0000313|EMBL:AFU58555.1};; EC=4.2.3.4 {ECO:0000313|EMBL:AFU58555.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
3-dehydroquinate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFG6_NITGG
PLM3-1_170_b2_sep16_scaffold_3685_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2938..3198
DNA (261bp) protein (87aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJY5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59538.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_3685_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3308..4195
DNA (888bp) protein (296aa)
Modification methylase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.113 {ECO:0000256|RuleBase:RU362026};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative DNA methylase N-4/N-6 domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IB54_NITGG
DNA methylase N-4/N-6 domain-containing protein
PLM3-1_170_b2_sep16_scaffold_3685_6
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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4228..4635
DNA (408bp) protein (136aa)
Flavin nucleotide binding protein Tax=Thaumarchaeota archaeon N4 RepID=V6AV54_9ARCH
Flavin nucleotide binding protein {ECO:0000313|EMBL:CDI06427.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
flavin nucleotide binding protein
PLM3-1_170_b2_sep16_scaffold_3685_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4636..4980)
DNA (345bp) protein (115aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN10_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58559.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_3685_8
unknown

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5089..5430
DNA (342bp) protein (114aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3685_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5664..6305
DNA (642bp) protein (214aa)
aroD; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
3-dehydroquinate dehydratase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IB60_NITGG
PLM3-1_170_b2_sep16_scaffold_3685_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6305..7150
DNA (846bp) protein (282aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Shikimate dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJW7_NITGG
PLM3-1_170_b2_sep16_scaffold_3685_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7147..8001
DNA (855bp) protein (285aa)
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00370}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00370};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00370};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Shikimate kinase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHZ8_NITGG
PLM3-1_170_b2_sep16_scaffold_3685_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8008..9315
DNA (1308bp) protein (436aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Probable 3-phosphoshikimate 1-carboxyvinyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN11_NITGG
PLM3-1_170_b2_sep16_scaffold_3685_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9388..10470
DNA (1083bp) protein (361aa)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Chorismate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFH5_NITGG
PLM3-1_170_b2_sep16_scaffold_3685_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10478..11683
DNA (1206bp) protein (402aa)
aspC; aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase {ECO:0000313|EMBL:AFU58566.1}; EC=2.6.1.1 {ECO:0000313|EMBL:AFU58566.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Aspartate aminotransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IB67_NITGG
PLM3-1_170_b2_sep16_scaffold_3685_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11680..12546
DNA (867bp) protein (289aa)
prephenate dehydrogenase (EC:1.3.1.12)
Putative prephenate dehydrogenase {ECO:0000313|EMBL:AFU58567.1}; EC=1.3.1.12 {ECO:0000313|EMBL:AFU58567.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative prephenate dehydrogenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJX0_NITGG
PLM3-1_170_b2_sep16_scaffold_3685_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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12580..12822
DNA (243bp) protein (81aa)
Zinc finger C2H2 domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0II08_NITGG
zinc finger C2H2 domain-containing protein
Zinc finger C2H2 domain-containing protein {ECO:0000313|EMBL:AFU58568.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_3685_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12825..13130)
DNA (306bp) protein (102aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFI5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58575.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_3685_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13252..13809
DNA (558bp) protein (186aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IB82_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58576.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Displaying 18 items

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