ggKbase home page

PLM3-1_200_b1_sep16_scaffold_42960_1

Organism: PLM6_200_b1_sep16_Deltaproteobacteria_56_19

near complete RP 42 / 55 MC: 2 BSCG 43 / 51 MC: 2 ASCG 13 / 38 MC: 2
Location: comp(2..568)

Top 3 Functional Annotations

Value Algorithm Source
Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KXN6_THERP similarity UNIREF
DB: UNIREF100
  • Identity: 41.5
  • Coverage: 106.0
  • Bit_score: 79
  • Evalue 2.40e-12
Oligopeptide ABC transporter, periplasmic oligopep tide-binding protein OppA {ECO:0000313|EMBL:CDP53890.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 31.2
  • Coverage: 192.0
  • Bit_score: 84
  • Evalue 1.80e-13
peptide ABC transporter substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 41.5
  • Coverage: 106.0
  • Bit_score: 79
  • Evalue 6.70e-13

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Devosia sp. DDB001 → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 567
ATGAATAAAAAACAAAAGATCAGTCGGCGCGATTTCATGGTCTATTCAGGCGCAGCCGCCGCAGGAATCATGCTGGAGGGTTCCCTTCCGAAGAGAAGCAAAGCGGCCCAAGCCAAGTCGAAAAATATCATCTTCATCGAGGCCCGGCCGATGACGGGATTCAGCAAGCTCGGAAACCGCAGGACCGAGGTGGTCGGCGGCCTCACGATGTCCGCGCTGGTGACGGCGACAAACTGGAAATCGAACCGAGACCCTCTCCTCGCCATCGAAGTCCCTTCGCTCGACAAGGGAACCTGGGAGCTCTTCAAGGACGGGCGCATGCGCACGGTCTGGCAGCTCCGCAAGAACATCAAATGGCACGATGGCGCCGACTTCTCGGCTCAGGATTATGTCTTCGGCTGGGAAGTTGCTTTGGATCCGAACGTCAAATACCGCACCCGGACCTCCGAGCAGAAGATGGAAAAGGTCGAGGCGCCCGATCCGCACACGCTGGTGATCACCTGGAAGGAAAATTTCCCTCTTGCGACCGACCTCTTCCAGGGGAATTTTTTCCCTCTCCCCCGCCAC
PROTEIN sequence
Length: 189
MNKKQKISRRDFMVYSGAAAAGIMLEGSLPKRSKAAQAKSKNIIFIEARPMTGFSKLGNRRTEVVGGLTMSALVTATNWKSNRDPLLAIEVPSLDKGTWELFKDGRMRTVWQLRKNIKWHDGADFSAQDYVFGWEVALDPNVKYRTRTSEQKMEKVEAPDPHTLVITWKENFPLATDLFQGNFFPLPRH