ggKbase | organisms

Consensus taxonomy: Acidobacteria → Bacteria

Metagenomic Context

Parent: PLM3_127cm_b2_sep2016_UNK Curated version: PLM3_127_b2_sep16_CONCOCT_129_curated

Properties

Avg. coverage: 7.22 Longest contig: 11.44 Kbp Bin length: 2.48 Mbp GC content: 70.54 %

Contigs count: 622 Features count: 2787 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 39 / 55 MC: 2 BSCG 38 / 51 ASCG 9 / 38

Displaying items 551-600 of 622 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
PLM3_127_b2_sep16_scaffold_38416 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	2959 bp	72.36	7.40	84.56
PLM3_127_b2_sep16_scaffold_35208 Species: R_Gammaproteobacteria_56_15 (50%)	2	2763 bp	70.18	7.49	89.90
PLM3_127_b2_sep16_scaffold_41282 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	2520 bp	70.08	8.81	99.40
PLM3_127_b2_sep16_scaffold_36651 Species: R_Nitrospirae_62_14 (50%)	2	2699 bp	69.91	8.45	92.81
PLM3_127_b2_sep16_scaffold_37443 Species: Sandaracinus amylolyticus (50%)	2	2667 bp	70.23	7.37	100.68
PLM3_127_b2_sep16_scaffold_44099 Species: R_Acidobacteria_67_28 (50%)	2	4276 bp	69.81	7.61	75.63
PLM3_127_b2_sep16_scaffold_61557 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	2912 bp	71.60	7.21	78.81
PLM3_127_b2_sep16_scaffold_43340 Species: Syntrophobacter fumaroxidans (50%)	2	2951 bp	70.21	6.46	96.78
PLM3_127_b2_sep16_scaffold_36409 Species: Candidatus Entotheonella sp. TSY2 (50%)	2	2711 bp	70.49	6.81	98.93
PLM3_127_b2_sep16_scaffold_61830 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	3106 bp	73.05	6.62	89.83
PLM3_127_b2_sep16_scaffold_129368 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)	2	3234 bp	69.51	5.10	64.75
PLM3_127_b2_sep16_scaffold_33000 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	2870 bp	70.35	6.53	99.20
PLM3_127_b2_sep16_scaffold_23456 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	3498 bp	65.92	7.93	95.45
PLM3_127_b2_sep16_scaffold_54391 Species: Runella slithyformis (50%)	2	2781 bp	70.55	6.53	91.48
PLM3_127_b2_sep16_scaffold_81019 Species: Thermoanaerobaculum aquaticum (50%)	2	2906 bp	68.20	5.68	95.39
PLM3_127_b2_sep16_scaffold_109965 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	2588 bp	66.46	8.00	69.55
PLM3_127_b2_sep16_scaffold_35518 Species: RBG_13_Chloroflexi_56_8_curated (50%)	2	4453 bp	67.08	6.84	99.64
PLM3_127_b2_sep16_scaffold_53113 Species: CSP1_2_Dadabacteria (50%)	2	3985 bp	67.98	7.60	67.75
PLM3_127_b2_sep16_scaffold_71571 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	3189 bp	72.34	7.81	85.42
PLM3_127_b2_sep16_scaffold_95860 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	2765 bp	69.22	10.25	87.45
PLM3_127_b2_sep16_scaffold_94538 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	2853 bp	70.59	5.15	100.32
PLM3_127_b2_sep16_scaffold_37016 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	2685 bp	71.25	6.42	97.54
PLM3_127_b2_sep16_scaffold_91899 Species: Chromohalobacter salexigens (50%)	2	2795 bp	73.35	6.23	98.43
PLM3_127_b2_sep16_scaffold_35045 Species: marine sediment metagenome (50%)	2	2770 bp	68.09	6.88	87.62
PLM3_127_b2_sep16_scaffold_33841 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	4949 bp	67.19	9.94	93.78
PLM3_127_b2_sep16_scaffold_33586 Species: Desulfatitalea sp. BRH_c12 (50%)	2	2841 bp	68.00	6.55	96.52
PLM3_127_b2_sep16_scaffold_49550 Species: CSP1_6_Rokubacteria (50%)	2	3372 bp	72.78	4.80	97.69
PLM3_127_b2_sep16_scaffold_20828 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)	2	4458 bp	73.10	6.63	100.07
PLM3_127_b2_sep16_scaffold_44717 Species: RBG_16_Chloroflexi_64_43_curated (50%)	2	3865 bp	74.18	4.85	97.18
PLM3_127_b2_sep16_scaffold_18736 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	3980 bp	65.98	9.72	74.17
PLM3_127_b2_sep16_scaffold_38530 Species: Alistipes indistinctus (50%)	2	2623 bp	73.85	6.63	93.21
PLM3_127_b2_sep16_scaffold_58595 Species: Gemmatimonas aurantiaca (50%)	2	2655 bp	73.03	5.42	83.84
PLM3_127_b2_sep16_scaffold_66978 Species: RBG_16_Chloroflexi_57_9_curated (50%)	2	3234 bp	71.18	8.49	72.45
PLM3_127_b2_sep16_scaffold_38799 Species: Candidatus Solibacter usitatus (50%)	2	2613 bp	67.24	6.31	88.86
PLM3_127_b2_sep16_scaffold_108970 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	2574 bp	74.63	5.89	99.88
PLM3_127_b2_sep16_scaffold_24187 Species: Pseudoxanthomonas suwonensis (50%)	2	3434 bp	69.98	6.81	92.78
PLM3_127_b2_sep16_scaffold_41674 Species: marine sediment metagenome (50%)	2	2505 bp	69.74	7.19	98.44
PLM3_127_b2_sep16_scaffold_44236 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	3251 bp	69.82	8.26	98.83
PLM3_127_b2_sep16_scaffold_30931 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	2983 bp	71.57	8.15	94.44
PLM3_127_b2_sep16_scaffold_36287 Species: RBG_16_Aminicenantes_63_16_curated (50%)	2	2716 bp	73.31	5.30	94.77
PLM3_127_b2_sep16_scaffold_22596 Species: Nitrosococcus halophilus (50%)	2	4224 bp	73.58	7.10	99.15
PLM3_127_b2_sep16_scaffold_155919 Species: Thermosinus carboxydivorans (50%)	2	2926 bp	72.08	8.15	99.35
PLM3_127_b2_sep16_scaffold_39168 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	2598 bp	71.75	7.56	89.61
PLM3_127_b2_sep16_scaffold_26130 Species: uncultured bacterium BAC10-4 (50%)	2	3289 bp	70.99	9.35	99.97
PLM3_127_b2_sep16_scaffold_46582 Species: R_Rokubacteria_73_56 (50%)	2	3130 bp	68.18	6.13	90.29
PLM3_127_b2_sep16_scaffold_36064 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	2725 bp	69.36	6.44	99.85
PLM3_127_b2_sep16_scaffold_34283 Species: RBG_16_Aminicenantes_66_30_curated (50%)	2	2808 bp	70.55	6.25	95.94
PLM3_127_b2_sep16_scaffold_26151 Species: RBG_16_Acidobacteria_70_10_curated (100%)	2	3288 bp	72.81	8.67	93.34
PLM3_127_b2_sep16_scaffold_38607 Species: R_NC10_66_22 (50%)	2	2621 bp	70.62	7.73	97.18
PLM3_127_b2_sep16_scaffold_40679 Species: Micromonospora aurantiaca (50%)	2	2541 bp	73.99	7.97	100.12

Displaying items 551-600 of 622 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (PLM3_127_b2_sep16_Acidobacteria_71_7) and add all its contigs / scaffolds to the organism you choose below

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PLM3_127_b2_sep16_Acidobacteria_71_7

PLM3_127cm_b2_sep2016_Acidobacteria_71_7

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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