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PLM3_127_b2_sep16_scaffold_19539_2

Organism: PLM3_127_b2_sep16_Nitrospirae_58_30

near complete RP 40 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: 406..4011

Top 3 Functional Annotations

Value Algorithm Source
mfd; transcription-repair coupling factor (EC:3.6.1.-) similarity KEGG
DB: KEGG
  • Identity: 73.7
  • Coverage: 1051.0
  • Bit_score: 1550
  • Evalue 0.0
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969, ECO:0000313|EMBL:CBK43979.1}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.7
  • Coverage: 1051.0
  • Bit_score: 1550
  • Evalue 0.0
Transcription-repair-coupling factor Tax=Candidatus Nitrospira defluvii RepID=D8P8Z7_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 73.7
  • Coverage: 1051.0
  • Bit_score: 1550
  • Evalue 0.0

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Taxonomy

Candidatus Nitrospira defluvii → Nitrospira → Nitrospirales → Nitrospira → Nitrospirae → Bacteria

Sequences

DNA sequence
Length: 3606
ATGACCAGAGACCAGCTCGTCCTACTTCTACAAGCGGCGCGGATCCAAGGGAAACGTATCGTGTTCACGAACGGCTGTTTCGATCTCATGCACGTGGGCCATACGCGCTACCTCCAGGCCGCGAAAGACCTGGGCGACCTGCTTGTCGTCGCCGTCAACAGCGACGCGTCCGTCAGGAGTTTGGATCGCCGCATTGCAGCCGGATGTCCTCGTCAAAGGCGGAGATTGGGCGGTGGAACGCATCGTCGGCCGCGAGATCGTCGAAGCGCGCGGCGGAGTCGTCCGTACCATTCCCTTGGTCCCCGGCGTCTCCACCACATCGCTGATCGAACGCATTCGCTCAACCACAACCTAGCCCAAGCAGTGTCCGATACTACCCACACCCATTCAGTGTCCCAGTGGTACATTCCTGTCGCCGCGGCATTGGCAGACGAGACAGGCCGTCCCTCTATCACCGGCTTGTACGGTTCCACCGCCGGGCTTGCCCTCACCACGCTCCTGCATCCTCAGTCGGGCACATTGGGGAATCGATCGTGGCTGATCGTTACCGGGTCGGACGAGGCGGCTGAACGCATCTTTGATGACCTGCACTTTTTCCATGATCTCATCGGTCTGTCGACGGCTCCCCTCGCCCTGTTCCCGAGATGGGAAACCTTGCCATACGAGGGCAGCGCGCCCCATGTCGGTCTGATCGCGCGCCGGATGAATGCCCTGCGTCACATCCGCACCGCGCCACAGACCTGCCTGGTCACCTCCATCGCGGCCCTGATGCAACGGCTGTTGCCCGTCACGACCTTCACCCGCACTACCCTGCAATTCAAGCTGCGTGGCACGATCGAGCGAGAGGCCCTCACCGGAGGGCTCTTACGTCTCGGTTACCACCGGGTCTCGGTGGTGGAAATCCCAGGCGAGTTTAGTATTCGAGGCGGCATTGTGGATATTTTCTCGACGGCCTATGCCGACCCGCTCCGTGTCGAATTTCTTGGCGAAACCGTCGACTCGCTCCGCCTGTTCGATCCCGCCACGCAGAAATCCACCGCGAAGCTGGATCGAGCGGTCGTCCTTCCCGCGCGGGAATATCTCCGTGCAGAGACTTCGCCGGATGCCCTCGCTCCCATTCCGGCGGATGCCGAGTGGCGCGCGCCGGACCTCTATCCCGACATGGACACCCTCTTCGATTATTTCACTGAACAGCCTATATTGGTCCTGGATCAGCCGGCTGCGTTGACAGGGGCCTGCGCGGACCTTTGGAGCAAGATCGACGACGGCTATCTCCGCCACGCCGATCGGGAGACCAGCGCCCCCTTCCCGTCACCGGAGCGGTTGTTTCTCTCCTGGCCGGAACTCATGGATCGCACGAACGGCTGGCCCACGCTCGCCCTCGAGCCGCTCACCGCGAGCGATGCGTCCTGGAATCCGATCCAGACCTTTCCCGCTCAGATCCCGGCCAGCGCTGGTCTCGGGGCTCGTGGGATGCCCTTCAGCCAGACCCTGGCCATCATGGATCGCTTGCGAGAAGAGTGCCGCGTGGTGCTCGTCGCAAGAAGTCGCGGCCAAGTGGATCGCTTGCTGGCGCTTTTACGCGAACACGATGTGCCGGCGATGGAATGGACAGTGGGGGCCTGGACTGCTTCCGGTAAAACCAAGGCGCCGTTTTACGTCTTACGCGGCGATTTATCTGCTGGACTCCTCGCACCGGACTTGCGCTTGGTCGTTCTGACGGAAGAAGAACTGTTTGCCAAAGGCGCGCGCCACAAGCCGCAAGCCAAGAGTAAAGCCGCGACCTTCCTCTCCTCGTTGGAAGATCTCAACGTAGGCGACTATGTCGTCCATGTCCAACATGGCATCGCCAAATATCAAGGCCTCAAACGCCTCTCGGTGCAAGACTTCGACAGCGATTATTTGATCCTGGAATTCGCCGGCGGCGACACGCTGTACGTCCCGCTGGAGAGGCTCAACCATGTGCAGCGGTATAGCGGAGCGGAGGGCCATGCGCCGCGCCTTGAACGTTTGGGCGGCACTAGTTGGGCCAAAACGACCGCGCGCGTGAAGCAAGACATCGAGGAGATGGCCCACGAGTTGGTTGACCTCTATGCCAACCGTGAACTTGTGACGCGCCATGCCTATGGGTTCGACAGCACGATGTACCACGAGTTCGAGGCTGCGTTTGAGTACGAAGAAACGGCGGATCAACTCAAAGCGATCGAAGACATTACGCACGACATGGGGTCCAGAAAACCGATGGACCGCCTGGTCTGTGGCGACGTCGGGTACGGAAAAACGGAAGTGGCCATGCGAGCAGCCTTCAAGGCCGTAGAAGACAATCGCCAGGTGGCGGTACTCGTCCCCACAACCCTGTTGGCTCACCAACATTACGACAACTTCTCAGAACGGTTCGCGCCGTTTCCGGCTCGCGTGTCCTTGCTCTCCCGATTCCAATCACCGAAGGAGGCCAAAGCCATTCTCAAAGACGTGGCAGCCGGAAACATTGACGTGGTGATCGGAACGCACCGGCTCCTCCAGAAGGATGTGGTGTTCCGCAATCTGGGCCTGGTGGTCATTGACGAAGAACAGTGGTTCGGTGTCAAACACAAGGAGCGATTGAAGCAACTCCGGACTCAAGTCGACGTCTTGACACTTACGGCCACCCCGATTCCTCGCACCTTGCAGATGGCCATGGCGAGCGTGCGTGATCTCTCGATCATCGAGACCCCTCCGGCGGGCCGCTTGTCCATTCGCACGCAGGTCGTCCGATCGAGTGACACGCTCATCCGAGAGGCGATGTTGCGCGAACTGGGGCGGGGCGGGCAGGTCTACTTCGTCCATAACCGAGTCGAAACGATGGAGAAGACGGGAGCTTGGCTCCAACAACTGGTGCCCGACGCGCGCATCGTGATGGCCCATGGGCAGATGAACGCCAAACCACTCGAAGCCGTGATGTTGAAGTTCTTTCGCCGAGAAGCGGATGTGTTGATCGCCTCGGCCATTATCCAATCGGGCATCGACGTGCCCCATGCCAACACGATCTTCGTCAATCGTGCTGACATGTTCGGCCTCGCGCAGCTGTACCAATTGCGCGGGCGAGTGGGACGAAGCGGCGACCAAGCCTACGCCTACTTCCTGGTCCCCGATGAGGGACGGTTAAACGAAGACGCCCAGAAGCGCCTCACCGCCATTCAGCAATTTACCGAACTGGGCGCCGGCTTCCGCATCGCTGCGGCGGATATGGAAATCCGTGGCGCCGGCAACCTTCTCGGGAAACAACAATCTGGACATATCGCTGCCATCGGACTCGATCTGTACATGCAGATGGTGGAGCAGGCCGTCCAGCGCCTCAAGGGCCAGGTGGTGGAAGAAGAGCCGGACCCCACCCTCCGGCTTAACGTCTCCGCCTTTATTCCGGATGACTACGTCGCCGATCCCCACCAGCGCCTCTCGTGCTACAAACGACTCGCCTCCTGCACCCAAGTCGGAGATCTCGCCTTACTCCATGGCGAAATACAAGATCGGTATGGGCTGGCCCCGGACTCCGTCGAGCGACACACTCATCCGAGAGGCGATGTTGCGCGAACTGGGGCGGGGCGGGCAGATCTACTTCGTCCATAA
PROTEIN sequence
Length: 1202
MTRDQLVLLLQAARIQGKRIVFTNGCFDLMHVGHTRYLQAAKDLGDLLVVAVNSDASVRSLDRRIAAGCPRQRRRLGGGTHRRPRDRRSARRSRPYHSLGPRRLHHIADRTHSLNHNLAQAVSDTTHTHSVSQWYIPVAAALADETGRPSITGLYGSTAGLALTTLLHPQSGTLGNRSWLIVTGSDEAAERIFDDLHFFHDLIGLSTAPLALFPRWETLPYEGSAPHVGLIARRMNALRHIRTAPQTCLVTSIAALMQRLLPVTTFTRTTLQFKLRGTIEREALTGGLLRLGYHRVSVVEIPGEFSIRGGIVDIFSTAYADPLRVEFLGETVDSLRLFDPATQKSTAKLDRAVVLPAREYLRAETSPDALAPIPADAEWRAPDLYPDMDTLFDYFTEQPILVLDQPAALTGACADLWSKIDDGYLRHADRETSAPFPSPERLFLSWPELMDRTNGWPTLALEPLTASDASWNPIQTFPAQIPASAGLGARGMPFSQTLAIMDRLREECRVVLVARSRGQVDRLLALLREHDVPAMEWTVGAWTASGKTKAPFYVLRGDLSAGLLAPDLRLVVLTEEELFAKGARHKPQAKSKAATFLSSLEDLNVGDYVVHVQHGIAKYQGLKRLSVQDFDSDYLILEFAGGDTLYVPLERLNHVQRYSGAEGHAPRLERLGGTSWAKTTARVKQDIEEMAHELVDLYANRELVTRHAYGFDSTMYHEFEAAFEYEETADQLKAIEDITHDMGSRKPMDRLVCGDVGYGKTEVAMRAAFKAVEDNRQVAVLVPTTLLAHQHYDNFSERFAPFPARVSLLSRFQSPKEAKAILKDVAAGNIDVVIGTHRLLQKDVVFRNLGLVVIDEEQWFGVKHKERLKQLRTQVDVLTLTATPIPRTLQMAMASVRDLSIIETPPAGRLSIRTQVVRSSDTLIREAMLRELGRGGQVYFVHNRVETMEKTGAWLQQLVPDARIVMAHGQMNAKPLEAVMLKFFRREADVLIASAIIQSGIDVPHANTIFVNRADMFGLAQLYQLRGRVGRSGDQAYAYFLVPDEGRLNEDAQKRLTAIQQFTELGAGFRIAAADMEIRGAGNLLGKQQSGHIAAIGLDLYMQMVEQAVQRLKGQVVEEEPDPTLRLNVSAFIPDDYVADPHQRLSCYKRLASCTQVGDLALLHGEIQDRYGLAPDSVERHTHPRGDVARTGAGRADLLRP*