ggKbase home page

PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 601-650 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_7904
Class: Deltaproteobacteria (75%)
4 4631 bp 47.51 14.45 66.79
PLM4_90_b1_sep16_scaffold_3352
Class: Deltaproteobacteria (100%)
4 5181 bp 48.72 15.37 93.51
PLM4_90_b1_sep16_scaffold_7905
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3432 bp 46.62 12.54 83.48
PLM4_90_b1_sep16_scaffold_17930
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 2757 bp 47.19 15.83 78.45
PLM4_90_b1_sep16_scaffold_17419
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 3685 bp 47.60 6.23 93.38
PLM4_90_b1_sep16_scaffold_14815
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 2501 bp 46.42 13.49 93.56
PLM4_90_b1_sep16_scaffold_12327
Class: Deltaproteobacteria (100%)
4 2748 bp 44.54 22.33 51.75
PLM4_90_b1_sep16_scaffold_13215
Order: Nostocales (50%)
4 3197 bp 47.64 7.32 76.10
PLM4_90_b1_sep16_scaffold_14048
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 2954 bp 42.04 15.39 84.50
PLM4_90_b1_sep16_scaffold_3872
Class: Deltaproteobacteria (50%)
4 4857 bp 53.08 15.13 89.75
PLM4_90_b1_sep16_scaffold_5026
Domain: Bacteria (75%)
4 4280 bp 47.31 8.62 84.88
PLM4_90_b1_sep16_scaffold_34812 4 2638 bp 54.36 6.65 81.20
PLM4_90_b1_sep16_scaffold_10133
Class: Deltaproteobacteria (50%)
4 3035 bp 51.57 10.23 94.40
PLM4_90_b1_sep16_scaffold_16982
Domain: Bacteria (100%)
4 3690 bp 50.00 13.33 94.47
PLM4_90_b1_sep16_scaffold_15464
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3755 bp 47.62 13.82 82.61
PLM4_90_b1_sep16_scaffold_10908
Domain: Bacteria (50%)
4 2922 bp 51.85 9.45 85.93
PLM4_90_b1_sep16_scaffold_6982
Species: GWC2_Nitrospirae_42_7_curated (50%)
4 4098 bp 51.66 16.87 77.67
PLM4_90_b1_sep16_scaffold_9863
Species: RBG_16_Aminicenantes_63_16_curated (50%)
4 4255 bp 50.46 17.20 80.24
PLM4_90_b1_sep16_scaffold_27288
Class: Deltaproteobacteria (100%)
4 3711 bp 44.06 13.14 75.26
PLM4_90_b1_sep16_scaffold_9866
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 4637 bp 45.59 14.14 74.27
PLM4_90_b1_sep16_scaffold_7931
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3424 bp 48.04 11.52 78.86
PLM4_90_b1_sep16_scaffold_11756
Species: RBG_16_Acidobacteria_64_8_curated (50%)
4 2814 bp 49.79 15.41 82.52
PLM4_90_b1_sep16_scaffold_26902
Species: RBG_16_Deltaproteobacteria_50_11_curated (50%)
4 3204 bp 50.25 12.17 89.79
PLM4_90_b1_sep16_scaffold_8822
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
4 3249 bp 47.89 15.47 86.89
PLM4_90_b1_sep16_scaffold_3898
Class: Alphaproteobacteria (50%)
4 4841 bp 50.86 6.72 80.56
PLM4_90_b1_sep16_scaffold_18690
Class: Deltaproteobacteria (100%)
4 2924 bp 44.08 6.31 83.41
PLM4_90_b1_sep16_scaffold_12613
Class: Deltaproteobacteria (50%)
4 3092 bp 46.18 8.25 80.82
PLM4_90_b1_sep16_scaffold_14849
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 4591 bp 50.58 11.57 50.51
PLM4_90_b1_sep16_scaffold_4283
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 5739 bp 45.60 12.73 80.14
PLM4_90_b1_sep16_scaffold_9374
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3148 bp 46.79 10.01 78.34
PLM4_90_b1_sep16_scaffold_25039
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
4 2584 bp 44.70 8.59 85.57
PLM4_90_b1_sep16_scaffold_34082
Class: Deltaproteobacteria (50%)
4 2779 bp 42.68 17.22 80.96
PLM4_90_b1_sep16_scaffold_8842
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 3245 bp 47.37 9.15 94.02
PLM4_90_b1_sep16_scaffold_22483
Order: Nostocales (50%)
4 4433 bp 46.63 3.79 91.56
PLM4_90_b1_sep16_scaffold_26926
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 3030 bp 48.68 15.15 89.01
PLM4_90_b1_sep16_scaffold_7190
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3603 bp 44.77 12.32 79.35
PLM4_90_b1_sep16_scaffold_10175
Species: RBG_13_Deltaproteobacteria_53_10_curated (75%)
4 3029 bp 51.47 11.24 95.08
PLM4_90_b1_sep16_scaffold_29720
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 2646 bp 48.11 16.10 90.02
PLM4_90_b1_sep16_scaffold_15248
Class: Deltaproteobacteria (75%)
4 5247 bp 47.86 17.27 77.76
PLM4_90_b1_sep16_scaffold_25306
Domain: Bacteria (100%)
4 3163 bp 49.04 10.24 66.96
PLM4_90_b1_sep16_scaffold_12122
Domain: Bacteria (50%)
4 2771 bp 47.28 8.99 63.55
PLM4_90_b1_sep16_scaffold_17221
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 2604 bp 47.85 14.69 84.33
PLM4_90_b1_sep16_scaffold_13269
Class: Deltaproteobacteria (50%)
4 2647 bp 46.24 8.27 82.40
PLM4_90_b1_sep16_scaffold_9652
Class: Deltaproteobacteria (100%)
4 3107 bp 47.41 11.49 88.45
PLM4_90_b1_sep16_scaffold_33032
Class: Deltaproteobacteria (50%)
4 2832 bp 48.45 12.87 78.28
PLM4_90_b1_sep16_scaffold_5604
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 4068 bp 46.66 8.30 74.19
PLM4_90_b1_sep16_scaffold_11294
Class: Deltaproteobacteria (75%)
4 3924 bp 48.60 9.98 83.56
PLM4_90_b1_sep16_scaffold_20191
Species: RBG_16_Deltaproteobacteria_48_10_curated (75%)
4 3170 bp 44.57 14.01 85.55
PLM4_90_b1_sep16_scaffold_13033
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 3884 bp 48.20 15.45 90.53
PLM4_90_b1_sep16_scaffold_10458
Class: Deltaproteobacteria (100%)
4 2986 bp 50.17 12.76 88.31
Displaying items 601-650 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.