ggKbase home page

PLM1_100_coex_sep16_Rokubacteria_71_11

PLM1_100cm_coex_sep2016_Rokubacteria_71_11
In projects: PLM1_100cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  rokubacteria_ggkbase

Consensus taxonomy: Rokubacteria  →  Bacteria

Displaying items 401-450 of 679 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM1_100_coex_sep16_scaffold_3616
Species: GWA2_Rokubacteria_73_35_curated (60%)
5 3832 bp 69.99 10.26 96.37
PLM1_100_coex_sep16_scaffold_4791
Domain: Bacteria (80%)
5 4619 bp 67.92 10.65 92.16
PLM1_100_coex_sep16_scaffold_9559
Class: Betaproteobacteria (60%)
5 3429 bp 70.22 16.05 98.08
PLM1_100_coex_sep16_scaffold_4027
Phylum: Proteobacteria (60%)
5 3620 bp 72.62 10.07 95.88
PLM1_100_coex_sep16_scaffold_5181
Phylum: Rokubacteria (60%)
5 4473 bp 70.15 11.10 95.91
PLM1_100_coex_sep16_scaffold_8189
Phylum: Rokubacteria (80%)
5 4552 bp 70.43 9.69 94.38
PLM1_100_coex_sep16_scaffold_6549
Phylum: Rokubacteria (100%)
5 5504 bp 67.57 7.63 95.77
PLM1_100_coex_sep16_scaffold_16632
Phylum: Proteobacteria (60%)
5 2770 bp 69.06 9.58 95.20
PLM1_100_coex_sep16_scaffold_4823
Phylum: Rokubacteria (80%)
5 3297 bp 75.80 8.33 93.81
PLM1_100_coex_sep16_scaffold_3665
Domain: Bacteria (60%)
5 3802 bp 68.12 9.31 96.03
PLM1_100_coex_sep16_scaffold_5210
Species: R_Rokubacteria_73_56 (60%)
5 3171 bp 72.63 9.65 97.26
PLM1_100_coex_sep16_scaffold_3154
Species: R_Rokubacteria_73_56 (80%)
5 4127 bp 74.22 10.18 96.83
PLM1_100_coex_sep16_scaffold_4318
Phylum: Rokubacteria (60%)
5 3504 bp 68.41 9.59 94.35
PLM1_100_coex_sep16_scaffold_7266
Species: R_Rokubacteria_73_56 (80%)
5 2692 bp 71.88 10.64 94.39
PLM1_100_coex_sep16_scaffold_2259
Domain: Bacteria (100%)
5 4922 bp 70.22 9.90 93.01
PLM1_100_coex_sep16_scaffold_4579
Phylum: Rokubacteria (80%)
5 3389 bp 68.57 9.34 99.41
PLM1_100_coex_sep16_scaffold_22389
Phylum: Rokubacteria (80%)
5 2640 bp 70.80 9.49 93.30
PLM1_100_coex_sep16_scaffold_4328
Phylum: Proteobacteria (60%)
5 3500 bp 70.43 13.03 96.94
PLM1_100_coex_sep16_scaffold_4584
Species: R_Rokubacteria_71_18 (80%)
5 3983 bp 67.09 11.90 92.64
PLM1_100_coex_sep16_scaffold_4587
Species: R_Rokubacteria_73_56 (80%)
5 3385 bp 72.23 8.15 97.31
PLM1_100_coex_sep16_scaffold_3429
Phylum: Rokubacteria (60%)
5 4891 bp 70.23 10.52 97.40
PLM1_100_coex_sep16_scaffold_1680
Domain: Bacteria (100%)
5 5804 bp 71.05 10.52 96.19
PLM1_100_coex_sep16_scaffold_4595
Phylum: Proteobacteria (60%)
5 3383 bp 74.25 11.40 98.17
PLM1_100_coex_sep16_scaffold_7035
Domain: Bacteria (60%)
5 3636 bp 69.77 9.36 89.69
PLM1_100_coex_sep16_scaffold_1949
Species: GWB2_Chloroflexi_54_36_curated (60%)
5 5332 bp 70.37 11.51 98.41
PLM1_100_coex_sep16_scaffold_958
Species: R_Rokubacteria_73_56 (60%)
5 7849 bp 67.40 12.35 91.62
PLM1_100_coex_sep16_scaffold_2804
Phylum: Rokubacteria (80%)
5 4393 bp 66.49 15.67 92.81
PLM1_100_coex_sep16_scaffold_4103
Phylum: Rokubacteria (80%)
5 3588 bp 72.69 10.99 97.24
PLM1_100_coex_sep16_scaffold_7560 5 2637 bp 69.09 10.86 89.99
PLM1_100_coex_sep16_scaffold_4104
Species: R_Rokubacteria_73_56 (80%)
5 6638 bp 69.70 11.52 96.54
PLM1_100_coex_sep16_scaffold_7059
Species: R_Rokubacteria_73_56 (75%)
4 3911 bp 71.49 10.24 91.28
PLM1_100_coex_sep16_scaffold_4627
Species: GWA2_Rokubacteria_73_35_curated (50%)
4 3371 bp 73.63 8.50 101.54
PLM1_100_coex_sep16_scaffold_3724
Class: Deltaproteobacteria (50%)
4 4455 bp 70.12 11.85 96.09
PLM1_100_coex_sep16_scaffold_7577
Species: R_Rokubacteria_73_56 (50%)
4 2633 bp 73.03 10.82 89.44
PLM1_100_coex_sep16_scaffold_12497
Phylum: Rokubacteria (100%)
4 3012 bp 71.58 9.06 71.81
PLM1_100_coex_sep16_scaffold_5018
Species: R_Rokubacteria_73_56 (50%)
4 3229 bp 73.55 7.71 100.06
PLM1_100_coex_sep16_scaffold_8539
Species: R_Rokubacteria_73_56 (50%)
4 4437 bp 71.35 9.47 95.13
PLM1_100_coex_sep16_scaffold_4638
Species: R_Rokubacteria_73_56 (50%)
4 3366 bp 68.36 12.34 91.89
PLM1_100_coex_sep16_scaffold_13863
Species: GWC2_Rokubacteria_70_16_curated (50%)
4 2602 bp 69.52 8.94 89.58
PLM1_100_coex_sep16_scaffold_2064
Species: R_Rokubacteria_73_56 (50%)
4 5170 bp 74.49 9.75 98.41
PLM1_100_coex_sep16_scaffold_5280
Class: Deltaproteobacteria (50%)
4 3153 bp 69.36 10.32 88.96
PLM1_100_coex_sep16_scaffold_5283
Order: Xanthomonadales (50%)
4 3152 bp 71.29 11.14 100.03
PLM1_100_coex_sep16_scaffold_2581
Phylum: Rokubacteria (75%)
4 4598 bp 71.42 10.44 98.19
PLM1_100_coex_sep16_scaffold_5797
Species: Sorangium cellulosum (50%)
4 3017 bp 68.81 9.89 91.08
PLM1_100_coex_sep16_scaffold_6893
Species: R_Alphaproteobacteria_66_14 (50%)
4 2764 bp 70.62 11.29 95.62
PLM1_100_coex_sep16_scaffold_1479
Phylum: Rokubacteria (50%)
4 6181 bp 71.51 11.89 99.89
PLM1_100_coex_sep16_scaffold_6896
Order: Rhodospirillales (50%)
4 3408 bp 71.42 11.05 91.11
PLM1_100_coex_sep16_scaffold_4396
Species: R_Rokubacteria_68_19 (50%)
4 3475 bp 66.47 11.18 98.68
PLM1_100_coex_sep16_scaffold_5556
Species: RLO_Rokubacteria_71_22 (50%)
4 3078 bp 73.42 9.11 98.73
PLM1_100_coex_sep16_scaffold_4918
Species: Candidatus Entotheonella sp. TSY1 (50%)
4 3266 bp 69.38 10.75 82.76
Displaying items 401-450 of 679 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.