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PLM3_60_coex_sep16_scaffold_2269_4

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_7

near complete RP 46 / 55 BSCG 45 / 51 MC: 2 ASCG 11 / 38 MC: 3
Location: 1744..5196

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.6
  • Coverage: 1170.0
  • Bit_score: 1665
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AW84_FRADG similarity UNIREF
DB: UNIREF100
  • Identity: 73.6
  • Coverage: 1170.0
  • Bit_score: 1665
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta similarity KEGG
DB: KEGG
  • Identity: 73.6
  • Coverage: 1170.0
  • Bit_score: 1665
  • Evalue 0.0

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Taxonomy

Frankia symbiont of Datisca glomerata → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3453
TTGAGCGACCCGCGTACCTCGGTCTCGCCCCGACTCTCCTTCGGCAAGATCCCCGAGATCCTTCCCATCCCTGACCTTATCGCCATCCAGCGGCAGTCCTTTGAGTGGCTGATCACCGACGGACTGCGGGAAACCTTCGAAGAGATCAGCCCCATCGAGGACTTCACCGGCCAGATGGCGCTCACCTTCGGCGAGCACCGCTTCGAGGAGCCCGAGCACTCGGTGGAGGAGTGCCGCGAGAAGGACAACACCTACTCCCGCAAGCTCCACGTCCAGGCCGAGTTCCAGAACCGCACCACCGGCGAGATCAAGTCCCAGTCGGTGTTCATGGGCGACTTCCCGGTCATGACCGACCAGGGCACGTTCATCATCAACGGCACCGAGCGGGTGGTCACCTCGCAGCTGGTCCGCTCGCCCGGGGTCATCTTCGAGCAGGAGCCCGACAAGACCCTCGACAAGATGCTGACCTCCTGCCGGGTCATCCCCGCCCGGGGTGCCTGGCTGGAGTTCGACGTCGACAAGAAGGACACCGTCGGCGTCCGCCTGGACCGCAAGCGCCGCCTGCCCGTCACCGTGCTGCTGCGTGGCCTCGGCATGACCGAGACCGAGATCCGCGAGCGTTTCGGCGAGTCCGAGACGATGATGCTCACCCTCGAGAAGGACCACACCAGGACCGAGGAGGACGCCCTCGTCGAGATCTACCGCCGCCTGCGCCCGGGCGAGCCGCCCAGCGCGGAGTCCGGCCGCCAGCTCCTCAACGGGCTGTTCTTCCAGCCCAAGCGCTACGACCTGGCCAAGGTCGGCCGCTACAAGCTGAACAAGAAGCTCGGCCTGGACGACTCGCACCGCGAGCTGACCCTGACCCGCGACGACCTCATCGCCACCGTCGGCTACCTGGTCCGGCTCCACGAGGGCGACCCGACCACGATCACCGACGACCAGGACCACTTCGGCAACCGGCGCCTGCGCTCGGTCGGCGAGCTGATCCAGAACCAGGTCCGCATCGGCCTCTCCCGCATGGAGCGGGTCGTGCGCGAGCGCATGACCACCCAGGACGCCGAGGCGATCACACCCCAGACCCTGATCAACATCCGCCCGGTGGTCGCGGCCATCAAGGAGTTCTTCGGCACCTCCCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGGCCGCCCTGACCCACCGGCGCCGCCTGTCGGCGCTCGGCCCTGGCGGGCTCTCGCGCGAGCGGGCCGGGTTCGAGGTGCGCGACGTCCACCCCTCCCACTACGGCCGCATGTGCCCGATCGAGACCCCCGAAGGCCCGAACATCGGCCTCATCGGCAACCTCTCCACCTACGCCCGCATCAACGAGTACGGCTTCGTCGAGACCCCCTACCGCAAGGTCGAGAAGGGCCGGGTCACCGACAAGGTGGACTACCTGACCGCCGACGACGAGGACCTGCACGTGATCGCGCAGGCCAACGCCCCGGTCGACGCCAGGGGCAACTTCGTCGAGGACCGCGTGCTGGTCCGCCAGGGCAGCCGCTCGGCCGGCGTGTCCGGCCAGCGCAGCGCCGCCCGGGCCGAGTACGGCACCGGCCAGGGCGTCGGCGTCACCGGCGAGGTCGCCAACGTGCTGCCCACCGAGGTCGACTACATGGACGTCAGCCCACGGCAGATGGTGTCGGTGGCCACCGCCCTGATCCCCTTCCTCGAGCACGACGACGCCAACCGGGCGCTGATGGGCGCCAACATGCAGCGGCAGTCGGTGCCGCTGCTGCGCTCCGAGGCGCCGCTGGTCGGCACCGGCATGGAGGGCCGCGTGGCGGTCGACGCCGGCGGCGTGGTGGTGGCCGAGCAGCCGGGCACGGTCGAGGACGTCTCGGCCGAGACGGTCACCGTGCGGCACGCCGACGGGTCGGCCAAAACCTACCGCATGCGCAAGTTCGAGCGGTCCAACCAGGGCACCTGCATCAACCAGAAGCCGATCGTCACCGAGGGCGCCCGCGTGGCCGCCGGGGACGTGCTGGCCGACGGGCCCTGCACCGACGCCGGCGAGCTCGCGCTCGGCAAGAACCTCCTGGTGGCGTTCATGCCCTGGGAGGGCCACAACTACGAGGACGCCATCATCCTGTCCGAGCGCCTGGTCAAAGACGACGTGCTCACCTCGATCCACATCGAGGAGCACGAGGTCGACGCGCGCGACACCAAGCTCGGGGCCGAGGAGATCACCCGGGACATCCCCAACGTCAGCGAGGACGTCCTGAAGGACCTCGACGAGCGGGGGATCATCCGCATCGGCGCCGAGGTCGACCCTGGCGACGTGCTGGTCGGCAAGGTGACCCCCAAGGGAGAGACCGAGCTGACCCCGGAGGAGCGCCTGCTCCGCGCGATCTTCGGCGAGAAGGCGCGCGAGGTCCGCGACACCAGCCTCAAGGTGCCCCACGGCGAGACCGGCAAGGTGATCGGCGTGCGGGTCTTCTCGCGCGACGCCGGCGACGACCTGAACCCGGGCGTCAACCAGCTCGTGCGGGTCTACGTGGCCCAGAAGCGCAAGATCTCCGACGGCGACAAGCTGGCCGGGCGCCACGGCAACAAGGGCGTCATCTCCAAGATCCTCCCCGAGGAGGACATGCCGTTCCTGTCGGACGGGACCCCGGTCGACGTGATCCTCAACCCGCTCGGCGTGCCGAGCCGGATGAACATCGGCCAGATCCTCGAGACCCACCTCGGCTGGGTGGCCGCGCACGGCTGGTCGTTCAAGGGCGTGCCCGACTGGGCCAAGACGGCCGGCTGGACCGCCGAGCACACCCACAAGGGCGAGCGGGTCAACCTCGGCACGCCGGTGTTCGACGGCGCGAACGAGGCCGCCATCGAGGACCTGCTCACCGCGACCCTCGGCACCTACGAGGACCCGATCACCGGCGACCAGCGCAAGCTGGTGGACTCCGAGGGCAAGGCCATCCTCTACGACGGCCGCACCGGCGAGCCCTACCCGTCGCCGGTCACGGTCGGCTACATCTACATCCTGAAGCTGCTCCACCTGGTCGACGACAAGATCCACGCCCGCTCGACCGGTCCGTACTCGATGATCACCCAGCAGCCGCTGGGGGGGAAGGCGCAGTTCGGCGGCCAGCGCTTCGGCGAGATGGAGGTCTGGGCCCTCGAGGCCTACGGCGCCGCCTACGCCCTGCAGGAGCTGCTCACCATCAAGTCCGACGACGTCCTCGGCCGCGTGAAGGTGTACGAGGCGATCGTCAAGGGCGAGAACATCCCCGAGCCCGGCATCCCGGAGTCCTTCAAGGTGCTCATCAAAGAGATGCAGTCACTCTGCCTGAACGTCGAGGTGCTCTCGGCCGAGGGTCAGGAGATCGAGATGCGGGAGACGGACGAGGACGTCTTCCGGGCCGCGGAGGAGCTTGGCATCGACCTGAGCCGGCGGGAGCCCTCGTCGGTCGAGGAGGTCTAA
PROTEIN sequence
Length: 1151
LSDPRTSVSPRLSFGKIPEILPIPDLIAIQRQSFEWLITDGLRETFEEISPIEDFTGQMALTFGEHRFEEPEHSVEECREKDNTYSRKLHVQAEFQNRTTGEIKSQSVFMGDFPVMTDQGTFIINGTERVVTSQLVRSPGVIFEQEPDKTLDKMLTSCRVIPARGAWLEFDVDKKDTVGVRLDRKRRLPVTVLLRGLGMTETEIRERFGESETMMLTLEKDHTRTEEDALVEIYRRLRPGEPPSAESGRQLLNGLFFQPKRYDLAKVGRYKLNKKLGLDDSHRELTLTRDDLIATVGYLVRLHEGDPTTITDDQDHFGNRRLRSVGELIQNQVRIGLSRMERVVRERMTTQDAEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQTNPLAALTHRRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGNLSTYARINEYGFVETPYRKVEKGRVTDKVDYLTADDEDLHVIAQANAPVDARGNFVEDRVLVRQGSRSAGVSGQRSAARAEYGTGQGVGVTGEVANVLPTEVDYMDVSPRQMVSVATALIPFLEHDDANRALMGANMQRQSVPLLRSEAPLVGTGMEGRVAVDAGGVVVAEQPGTVEDVSAETVTVRHADGSAKTYRMRKFERSNQGTCINQKPIVTEGARVAAGDVLADGPCTDAGELALGKNLLVAFMPWEGHNYEDAIILSERLVKDDVLTSIHIEEHEVDARDTKLGAEEITRDIPNVSEDVLKDLDERGIIRIGAEVDPGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVFSRDAGDDLNPGVNQLVRVYVAQKRKISDGDKLAGRHGNKGVISKILPEEDMPFLSDGTPVDVILNPLGVPSRMNIGQILETHLGWVAAHGWSFKGVPDWAKTAGWTAEHTHKGERVNLGTPVFDGANEAAIEDLLTATLGTYEDPITGDQRKLVDSEGKAILYDGRTGEPYPSPVTVGYIYILKLLHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVLGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSAEGQEIEMRETDEDVFRAAEELGIDLSRREPSSVEEV*