ggKbase home page

PLM3_60_coex_sep16_scaffold_8722_7

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_16

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 12 / 38 MC: 3
Location: comp(2888..3892)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma70 factor Tax=Rhizobium loti RepID=UPI00035E67E1 similarity UNIREF
DB: UNIREF100
  • Identity: 75.1
  • Coverage: 334.0
  • Bit_score: 510
  • Evalue 7.40e-142
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:AID31608.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.0
  • Coverage: 328.0
  • Bit_score: 504
  • Evalue 9.70e-140
RNA polymerase sigma70 factor similarity KEGG
DB: KEGG
  • Identity: 74.2
  • Coverage: 333.0
  • Bit_score: 500
  • Evalue 2.20e-139

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mesorhizobium huakuii → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1005
GTGGTGATAACCGACCTGATCAGCAGGGCGCGGGCCGGGGACGGCGAGGCGTTCCGAGAGCTGACCGAGCCGTACCGTCGCGAGCTACAGGTGCACTGCTACTGGATGCTCGGTTCCTTGCAGGACGCCGAGGACGCCCTCCAGGACACGCTGCTGGCCGCCTGGCAGGGCCTCGGAGGGTTCCAGGGACGCGCCTCGATCCGCACCTGGCTCTACCGGATCGCCACCAACAGGTGCCTCAACGCGCGTCGGTCGGCGAGCCGACGCCCGGCCCGGGAGTGGGACATGCCCGAGGTTGAACCGCCCGAACCGACCCGGTTCGGCGAGCTCGTATGGCTCGAGCCATATCCCGACGCCCTCCTAGAGGGTGCGATCGACGTGCCGCTCGGCCCCGAGGCCCGGTATGAGCAGACCGAAGCCATCTCCCTGGCCTTCGTCACCGCCCTTCAGGTCCTGCCGCCTCGCCAGCTCGCCGTGCTCATCCTGCGCGACGTCCTCGGATTCCACGCCAACGAGGTGGCCGACATGCTCGACTCGACCGTCGAATCGGTCAACAGCGCCCTCAAACGGGCCCGCGCCAGTCTGCAGCGCCGGCAGCCGCCGACCGACGAGCGCGAACCGGCTCCCGCCCCCGACTCAACCTCCGAGCAGGCGCTCGTGGCGGACTTCGTCCGCGCCTACGAGTCCGGCGATCTCGACGCGCTGGTCGCCCTGCTCACCGACGATATCCACGTCTCCATGCCACCGATTCCCCTCGAATACCAGGGCCGCGACGTCGTGGCCCGCCTCTTCGCCAGCATCTTCCGCTCGGGCAGGAGGGTTGACCTCGTGCCGACGCGAGCCAATGGTCAGCCGGCGTTCGGGGCCTACCTGCGCGCCTCCACCGGCATCCGCCATGGAACCGGCCTGTTCGTCCTCACCCTCACCGGCGACCGGATCTGCGCCTTCACCCGCTTCGACAACAGCGTGTTCCCATGGTTCGGGCTGCCGCGATCGCTTCCTTAG
PROTEIN sequence
Length: 335
VVITDLISRARAGDGEAFRELTEPYRRELQVHCYWMLGSLQDAEDALQDTLLAAWQGLGGFQGRASIRTWLYRIATNRCLNARRSASRRPAREWDMPEVEPPEPTRFGELVWLEPYPDALLEGAIDVPLGPEARYEQTEAISLAFVTALQVLPPRQLAVLILRDVLGFHANEVADMLDSTVESVNSALKRARASLQRRQPPTDEREPAPAPDSTSEQALVADFVRAYESGDLDALVALLTDDIHVSMPPIPLEYQGRDVVARLFASIFRSGRRVDLVPTRANGQPAFGAYLRASTGIRHGTGLFVLTLTGDRICAFTRFDNSVFPWFGLPRSLP*