ggKbase home page

PLM3_5_b1_sep16_scaffold_4921_2

Organism: PLM3_5_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 41 / 55 MC: 3 BSCG 44 / 51 MC: 5 ASCG 12 / 38 MC: 3
Location: comp(585..1100)

Top 3 Functional Annotations

Value Algorithm Source
Isopentenyl-diphosphate Delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00202, ECO:0000256|SAAS:SAAS00231155}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00202};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00202};; IPP:DMAPP isomerase {ECO:0000256|HAMAP-Rule:MF_00202}; Isopentenyl pyrophosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00202}; Isopentenyl-diphosphate Delta-isomerase; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.1
  • Coverage: 166.0
  • Bit_score: 237
  • Evalue 8.70e-60
idi; isopentenyl-diphosphate delta-isomerase (EC:5.3.3.2) similarity KEGG
DB: KEGG
  • Identity: 68.5
  • Coverage: 165.0
  • Bit_score: 236
  • Evalue 3.00e-60
Isopentenyl-diphosphate Delta-isomerase Tax=Frankia sp. QA3 RepID=I8QYD3_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 68.1
  • Coverage: 166.0
  • Bit_score: 237
  • Evalue 6.20e-60

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Frankia sp. QA3 → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 516
TTGGTCGTCCTGCTCGACGAGCAGGGACGTCCGGTCGGGACCATGCCCAAGGCCGAGGTCCACGGGACCGACACCCCGCTGCACCTGGCCTTCTCGGTGTACGTGTTCGACTCGGGGGGCAGCCTGCTGGTCACCCGGCGGGCCCTGGGCAAGCGGACCTGGCCGGGGGTGTGGACCAACTCCTGCTGCGGCCACCCGGCCCCGGGCGAGGACCCGGCCGACGCCGCCCGCCGACGCCTCGGCCAGGAGCTCGGGCTGGCCCCGGCCCGCCTCGAGCCGGTCCTGCCCTCGTTCGCCTACCGGGCCGTGGCCGCCGACGGGATGGTCGAGAACGAGGTCTGCCCGGTCTTCTTCGCCCACATCGACGGCGACCCCGAGCCGGCCCCAACCCCCGACCCCGAGGAGGTGGCCGAGTGGCGCTGGGTCCCCTGGGCGTCGTTCCGCACCCTGGCCGCCGCCGCCCCCTGGGCCCTCAGCCCGTGGGCGGTCGAGCAGGTCGGCCAGCTCCCCCCCTGA
PROTEIN sequence
Length: 172
LVVLLDEQGRPVGTMPKAEVHGTDTPLHLAFSVYVFDSGGSLLVTRRALGKRTWPGVWTNSCCGHPAPGEDPADAARRRLGQELGLAPARLEPVLPSFAYRAVAADGMVENEVCPVFFAHIDGDPEPAPTPDPEEVAEWRWVPWASFRTLAAAAPWALSPWAVEQVGQLPP*