ggKbase home page

PLM3_5_b1_sep16_scaffold_4987_2

Organism: PLM3_5_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 41 / 55 MC: 3 BSCG 44 / 51 MC: 5 ASCG 12 / 38 MC: 3
Location: comp(549..1076)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein Tax=Nocardioides sp. Iso805N RepID=UPI000381F420 similarity UNIREF
DB: UNIREF100
  • Identity: 50.6
  • Coverage: 166.0
  • Bit_score: 169
  • Evalue 2.10e-39
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.2
  • Coverage: 166.0
  • Bit_score: 166
  • Evalue 3.30e-38
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 48.2
  • Coverage: 168.0
  • Bit_score: 150
  • Evalue 2.90e-34

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mumia flava → Mumia → Propionibacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 528
GTGGATCAGGTTGTCATCACCAGTCTCGGAGCCCGGCTCGCGCACGATAGGCAGGGCGCGATCGGTGACATCTATGCCGCCCTGGGCTCAACGGTGCTCAGGTACCTGCAACGGCTCGTTGGCCACGACGACGCCGAAGACGTCCTGCAGCGGGTCTTCTACGAGGTGTGGCGGCACAACGATCGCTACGACCCCTCCAGAAGCCTGGAGGCATGGATACTGGGTGTCGCCCGCAAACGGGCGATCGACCACCTGCGCCGTCGGCGCAACCCCGCAGTCGCGTTAGAAAATTTGGACCACATCCAGGGTGACGACGGCCGAGAGTGGGCCGAGCGCTACGCACGGGCCCGTGAGGTTCGCAACGCGCTCAACCGCCTGCCGGCAGAGCAACGCGAGGTCCTCGCGCTGGCGTACTTCGGTAGCTACACCCAGTCACAGATCGCCACCTACCTGGAACTTCCGCTTGGAACCGTCAAGGCGCGAGCGTTCCGGGGCCTACGCCGCCTCGCCGCCATCCTTCCCCCGTAG
PROTEIN sequence
Length: 176
VDQVVITSLGARLAHDRQGAIGDIYAALGSTVLRYLQRLVGHDDAEDVLQRVFYEVWRHNDRYDPSRSLEAWILGVARKRAIDHLRRRRNPAVALENLDHIQGDDGREWAERYARAREVRNALNRLPAEQREVLALAYFGSYTQSQIATYLELPLGTVKARAFRGLRRLAAILPP*