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PLM3_5_b1_sep16_scaffold_12604_6

Organism: PLM3_5_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 41 / 55 MC: 3 BSCG 44 / 51 MC: 5 ASCG 12 / 38 MC: 3
Location: comp(2280..3020)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma 70 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEAC4 similarity UNIREF
DB: UNIREF100
  • Identity: 55.1
  • Coverage: 236.0
  • Bit_score: 248
  • Evalue 5.00e-63
RNA polymerase sigma-E factor {ECO:0000313|EMBL:CCH79757.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.0
  • Coverage: 205.0
  • Bit_score: 248
  • Evalue 9.20e-63
putative RNA polymerase ECF-subfamily sigma factor similarity KEGG
DB: KEGG
  • Identity: 53.2
  • Coverage: 248.0
  • Bit_score: 246
  • Evalue 4.10e-63

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Taxonomy

Tetrasphaera japonica → Tetrasphaera → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 741
GTGCGCTATCCTGCCCCGGTGGCGACCCTTGTCCCGTTGCCACAGTTCCTCGGAGCGGAGGACCTCCTGGTACAGCCAAGCTCGACCTCTGACCTGGGCGGCGAGATCATCCCGGCGGACCCCGACGGGGCCCGCGTGCCGGCCAGCGAGACCGAGGAGGAGCGGCGTCAGCGCTTCACCGACTCGGCCATCCCGCTGCTGGACACCATCTACGCCGGCGCCCTGCGCCTGACCCGGAACCCGGCCGACGCCGAGGACCTGGTCCAGGAGACCTTCCTGCGCGCCTACAACGCCTTCCACCAGTTCGAGCCGGGCACCAACCTCAAGGCCTGGCTGTACCGGATCCTCACCAACGCCTACATCAACGCCTACCGCAAGCAGCAGCGCAACCCGCAGTCGGTCCCGACCGAGGACGTCGACGACTTCTCGCTGTACCAGCGGATCGCCAACGCCAACCCCTCGGGCGCCGAGACGCCCGAGGACCTGCTGCTCGACCAGATCCCCGAGGAGGAGGTCCGCGAGGCACTCGACACGTTGCCCGAGCAGTTCCGCATGGCGGTGCTGCTGGCCGACGTGGAGGGCTTCTCCTACAAGGAGATCGCCGACATCATGGGCACCTCGATCGGGACCGTGATGTCGCGGCTGCACCGCGGCCGGCGTCAGCTCCAGCGGCGCTTGTGGGAGTTCGCGGCCGACCGCGGGCTGATCGAGGAGGGACAGGAATGGGTTCGGCCGAAGTAG
PROTEIN sequence
Length: 247
VRYPAPVATLVPLPQFLGAEDLLVQPSSTSDLGGEIIPADPDGARVPASETEEERRQRFTDSAIPLLDTIYAGALRLTRNPADAEDLVQETFLRAYNAFHQFEPGTNLKAWLYRILTNAYINAYRKQQRNPQSVPTEDVDDFSLYQRIANANPSGAETPEDLLLDQIPEEEVREALDTLPEQFRMAVLLADVEGFSYKEIADIMGTSIGTVMSRLHRGRRQLQRRLWEFAADRGLIEEGQEWVRPK*