ggKbase home page

PLM3_30_b2_sep16_scaffold_12484_3

Organism: PLM3_30_b2_sep16_Chthoniobacter_flavus_54_8

near complete RP 43 / 55 MC: 2 BSCG 48 / 51 MC: 1 ASCG 14 / 38
Location: comp(952..3741)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.9
  • Coverage: 923.0
  • Bit_score: 1059
  • Evalue 0.0
Transcription-repair-coupling factor Tax=Chthoniobacter flavus Ellin428 RepID=B4CX01_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 59.9
  • Coverage: 923.0
  • Bit_score: 1059
  • Evalue 0.0
mfd; transcription-repair coupling factor mfd (superfamily II helicase) similarity KEGG
DB: KEGG
  • Identity: 48.0
  • Coverage: 894.0
  • Bit_score: 776
  • Evalue 5.70e-222

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Chthoniobacter flavus → Chthoniobacter → Spartobacteria → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 2790
CAATCATCGCCAGATCATCCGCAGTCTGCGGATTCGACGATTTGGATCCTTTGCCCCAGCGTTCATTCTCAAGAGTTGCTCTATGAAAGTCTGCTCAACTGGCAGCCGGATGCGCTTTTCCTCCCGGAAGCAGAGTTTGCCGCAGCCGAAAATGTTTTGCCGGATCCGGAAATTGCCGCCGAACGACTGGCAGTCCTCATGGAAGTCGGCCGGCGAACCGGCCAACACATCATCGTGGCAACACGCGCGAGTCTCGATCAAGCTGCCCCAAAGCACGGCGCTCTGGAATCTGCCGTCACCCAACTTCAGCGCGGCGTGGCCTCGAAGATGGAAAGCCTGCTTGAACGACTCGTAGGCACTGGCTACGAACGCGTCGCCCAAGTCACCACCCGGGGACAATTCGCCGTCCGTGGCGGCATTGTCGATCTTTATTCGTGGCAGGCTCCAATGCCGTTCCGGGTGGAATTCTACGGAGATCAGATCGAATCCCTTCGTGAGTTTGACATCGATACTCAAACTTCAGTGCGCGATTTGAAATCAGTCGACGTTTTGCTCGATCAGGGAGCGCTCGACCAGAGCAGCCAGGTTCGCCATTACGTCAAGCGCGATCACCTTGTAATTAACATTGAGCCGGATATGGAAGGCGGAGCTTCAGCGACGGCGGGCTCGCGGGAGCTCGCCCTTCCACAGACCCAGATTAGCGAAGGCTGGATTGAGACTGGTCCGGAAGATTTCAGCGGTGCATTTCAAGATTGCGAGATCGGCGAGTTTGCGGTCGGCGATTTGGTACTCGCCGAGGCGAAACGGGCGCAGTTTGTCGAGCGCTTAGAGGAATGGCGGCGCAACAACGCGAAAATCGCCATTTACTTCCAGACCGAAGGCGAGATCGAGCGTTTTCGCGAGATCATGGCCGGCTCCATTGAAGGGGTCAATTTCGTGGAAGGAACCTTGGCGCGCGGATTTTGTTTTCCTGCGGCTAATCTTGTCGTCCTCTCGGCCGCGGAATTATTTGGACGATTTGCGGCCCATCCGCGCAGACGTTTACGTCGTGCGGAACGCAATCGCGCACAGATTGATTTCAGTGAGCTCAACGAGGGCGACCTCGTGGTGCACCTCGAGCATGGCATCGGCCGATTCCTCGGACTCGACAAATTCGTTGTAGGGCAGGCGCCTCGCCTGCCAAACGCGGATGGGACGGGCTCGGCAAGCGGAGCGCTTGCCCTACAACAGCAAGGGCAGCCACAGGAAGTATTGGTTCTCGAGTTTGCAGACGAAGCGAAGCTCTATGTTCCACTCGAGCAGGCTTATCTGGTCTCCCGCTACGTTGGCGCAGGAAAAAGATCGCCATCTCTCAGCTCACTCGGCGACGGAAGATGGGCCCGGGCCAAAATCAAGGCGGCGGCTTCCATATTTGATTACGCCGGGAAAATGCTTGCAGTCCAGGCGCAGCGGGAAACGAATCCCGGTTACCCGTTCGCTCCGGACTCCAGGTGGCAGTCGGAATTTGAACATTCATTTCCGTTTCGTGAAACGCCGGACCAAATGAAGGCGATCATCGATACGAAGATGGACATGGAACGTCCTCGCCCGATGGACCGTTTAATTTGTGGCGACGTCGGGTTCGGCAAGACCGAGGTGGCGGTGCGCGCGGCGTTTAAGACTGTCATGGACGGAAAACAAGTGGCCGTCCTGGCGCCGACCACAGTTCTGGCTCAACAACATTTCGAGGTGTTTCGGCAACGAATGCTCGATTACCCGGTGCGCATCGAAATGCTCAGCCGTTTTCGGTCGCAATCCGAACAGAAGAAAGTTTTGCGGCTATTGCGCGAAGGCGGCGTTGATATTGTCATCGGCACTCATCGGCTTATTTCCGGCGACATCGTATTCAAAGATCTCGGCCTTGTGGTGATCGACGAGGAGCAGCGTTTCGGTGTTCTGCATAAGGAGAAATTCAAAGAGCTCTTCAAGCTGGTCGACGTGCTGACGCTATCGGCCACGCCGATCCCGCGCACGTTGTATCTGTCGCTTGTAGGCGTAAAAGACATGTCCACTATTGAGACGCCGCCGCTCAATCGCCTGCCCGTGGAAACAGTCGTGTCGGCTTACGATGAACGGCTCATTCGCGCGGCGATTGATCGCGAGCTTGAACGGCAGGGTCAGGTATTTTTCCTGCACAATCGCGTAGCGACCATCGAGCGGGTGCGTGATCGGATCGTCGATCTTTGTCCGTCGGCCAGAGTTGAAATCGGGCACGGGCAGATGGATGCGGACGAACTGGAAGGCGTGATGGCGCGATTTATTGCCGGGAAAATCGACGTGCTCGTTTGCACGACGATCATCGAAAGTGGTCTCGATATTCCGAATGCAAACACCATCATTATCGATCGAGCGGATCAATTTGGTTTGGCAGACCTGTATCAATTGCGCGGGCGCGTCGGGCGGGCGGAGCACAAGGCCTACGCTTATTTGCTGCTTCCGCGCGAGATGATGACCGTGGGCGCAGCGCGCAAACGGATCAGCGCCATCAAGCAGTACAGTTCGCTCGGGGCCGGTTTTCGCATCGCCATGCGCGACTTGGAGATTCGCGGTGCGGGCAGCATACTGGGCACAGCTCAAAGCGGTCACATCGTTGCGATCGGCTTCGATTTATATTGTCAGTTGCTCAAACAGGCTGTGACACAGCTCAAAGGCAAGAAGCCGCGGTTTCGCCTCGATGTCGATTTAAACGTTGATTTCGTCGCCACAAATGAAGCGGAGTTTGTGCAGCAGCCAAGCGTGAACGCAAATTGA
PROTEIN sequence
Length: 930
QSSPDHPQSADSTIWILCPSVHSQELLYESLLNWQPDALFLPEAEFAAAENVLPDPEIAAERLAVLMEVGRRTGQHIIVATRASLDQAAPKHGALESAVTQLQRGVASKMESLLERLVGTGYERVAQVTTRGQFAVRGGIVDLYSWQAPMPFRVEFYGDQIESLREFDIDTQTSVRDLKSVDVLLDQGALDQSSQVRHYVKRDHLVINIEPDMEGGASATAGSRELALPQTQISEGWIETGPEDFSGAFQDCEIGEFAVGDLVLAEAKRAQFVERLEEWRRNNAKIAIYFQTEGEIERFREIMAGSIEGVNFVEGTLARGFCFPAANLVVLSAAELFGRFAAHPRRRLRRAERNRAQIDFSELNEGDLVVHLEHGIGRFLGLDKFVVGQAPRLPNADGTGSASGALALQQQGQPQEVLVLEFADEAKLYVPLEQAYLVSRYVGAGKRSPSLSSLGDGRWARAKIKAAASIFDYAGKMLAVQAQRETNPGYPFAPDSRWQSEFEHSFPFRETPDQMKAIIDTKMDMERPRPMDRLICGDVGFGKTEVAVRAAFKTVMDGKQVAVLAPTTVLAQQHFEVFRQRMLDYPVRIEMLSRFRSQSEQKKVLRLLREGGVDIVIGTHRLISGDIVFKDLGLVVIDEEQRFGVLHKEKFKELFKLVDVLTLSATPIPRTLYLSLVGVKDMSTIETPPLNRLPVETVVSAYDERLIRAAIDRELERQGQVFFLHNRVATIERVRDRIVDLCPSARVEIGHGQMDADELEGVMARFIAGKIDVLVCTTIIESGLDIPNANTIIIDRADQFGLADLYQLRGRVGRAEHKAYAYLLLPREMMTVGAARKRISAIKQYSSLGAGFRIAMRDLEIRGAGSILGTAQSGHIVAIGFDLYCQLLKQAVTQLKGKKPRFRLDVDLNVDFVATNEAEFVQQPSVNAN*