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PLM6_50_b2_sep16_Deltaproteobacteria_54_7

PLM3-1_50cm_b2_sep2016_Deltaproteobacteria_54_7
In projects: PLM3-1_50cm_b2_sep2016  |  PLM2016-drep98-anvio  |  UBP10  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 301-350 of 593 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3-1_50_b2_sep16_scaffold_16831
Domain: Bacteria (85.71%)
7 5878 bp 49.37 7.35 60.68
PLM3-1_50_b2_sep16_scaffold_8245
Class: Deltaproteobacteria (100%)
5 3373 bp 53.99 7.34 92.59
PLM3-1_50_b2_sep16_scaffold_30473
Domain: Bacteria (100%)
5 3053 bp 53.32 7.32 84.80
PLM3-1_50_b2_sep16_scaffold_16289
Class: Deltaproteobacteria (66.67%)
3 2932 bp 55.80 7.32 60.27
PLM3-1_50_b2_sep16_scaffold_4052
Species: RLO_Deltaproteobacteria_60_16 (100%)
4 4896 bp 54.29 7.32 92.28
PLM3-1_50_b2_sep16_scaffold_15684
Class: Deltaproteobacteria (100%)
4 2789 bp 54.46 7.31 83.69
PLM3-1_50_b2_sep16_scaffold_8241
Class: Deltaproteobacteria (85.71%)
7 6871 bp 52.71 7.31 77.28
PLM3-1_50_b2_sep16_scaffold_39110
Species: RLO_Deltaproteobacteria_60_19 (75%)
4 2527 bp 55.68 7.30 94.97
PLM3-1_50_b2_sep16_scaffold_24414
Species: RLO_Deltaproteobacteria_60_19 (66.67%)
3 2637 bp 52.94 7.28 101.71
PLM3-1_50_b2_sep16_scaffold_11340
Class: Deltaproteobacteria (57.14%)
7 4492 bp 49.29 7.28 63.85
PLM3-1_50_b2_sep16_scaffold_17556
Species: RLO_Deltaproteobacteria_57_22 (66.67%)
3 3473 bp 55.77 7.26 89.06
PLM3-1_50_b2_sep16_scaffold_38434
Domain: Bacteria (50%)
4 2520 bp 52.94 7.26 81.67
PLM3-1_50_b2_sep16_scaffold_15602
Species: RLO_Deltaproteobacteria_60_19 (100%)
4 3491 bp 56.06 7.26 93.24
PLM3-1_50_b2_sep16_scaffold_4230
Species: RLO_Deltaproteobacteria_60_19 (60%)
5 6417 bp 53.16 7.25 80.04
PLM3-1_50_b2_sep16_scaffold_13716
Species: RLO_Deltaproteobacteria_60_19 (71.43%)
7 4385 bp 52.82 7.25 85.59
PLM3-1_50_b2_sep16_scaffold_8030
Phylum: Proteobacteria (50%)
8 9223 bp 56.38 7.25 86.43
PLM3-1_50_b2_sep16_scaffold_25183
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 3667 bp 54.76 7.24 85.25
PLM3-1_50_b2_sep16_scaffold_6349
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (50%)
8 4663 bp 54.88 7.24 92.58
PLM3-1_50_b2_sep16_scaffold_14168
Species: RLO_Deltaproteobacteria_57_22 (62.5%)
8 5887 bp 53.58 7.24 97.18
PLM3-1_50_b2_sep16_scaffold_23451
Species: RLO_Deltaproteobacteria_60_19 (60%)
5 3033 bp 54.14 7.22 88.92
PLM3-1_50_b2_sep16_scaffold_11082
Domain: Bacteria (75%)
4 2875 bp 49.25 7.20 75.03
PLM3-1_50_b2_sep16_scaffold_11990
Species: RLO_Deltaproteobacteria_57_22 (50%)
4 2755 bp 55.64 7.19 86.24
PLM3-1_50_b2_sep16_scaffold_8615
Species: R_Burkholderiales_57_36 (71.43%)
7 3294 bp 53.98 7.19 96.99
PLM3-1_50_b2_sep16_scaffold_12385
Species: RLO_Deltaproteobacteria_57_22 (50%)
4 4362 bp 52.66 7.19 93.40
PLM3-1_50_b2_sep16_scaffold_17269
Phylum: Proteobacteria (66.67%)
3 3383 bp 56.61 7.18 89.83
PLM3-1_50_b2_sep16_scaffold_9224
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 3176 bp 54.91 7.18 84.07
PLM3-1_50_b2_sep16_scaffold_11673
Class: Deltaproteobacteria (75%)
4 3593 bp 52.52 7.18 81.83
PLM3-1_50_b2_sep16_scaffold_15978
Species: RLO_Deltaproteobacteria_60_19 (75%)
4 3327 bp 52.51 7.17 91.43
PLM3-1_50_b2_sep16_scaffold_7398
Domain: Bacteria (54.55%)
11 7659 bp 54.82 7.17 85.86
PLM3-1_50_b2_sep16_scaffold_6466
Class: Deltaproteobacteria (50%)
4 3833 bp 56.82 7.16 95.72
PLM3-1_50_b2_sep16_scaffold_24427
Class: Deltaproteobacteria (80%)
5 3312 bp 53.56 7.16 94.20
PLM3-1_50_b2_sep16_scaffold_2397 12 6345 bp 47.88 7.16 60.66
PLM3-1_50_b2_sep16_scaffold_12066
Species: GWD2_Deltaproteobacteria_55_8_curated (50%)
2 2748 bp 55.35 7.15 99.45
PLM3-1_50_b2_sep16_scaffold_14523
Class: Deltaproteobacteria (85.71%)
7 6381 bp 52.67 7.15 82.79
PLM3-1_50_b2_sep16_scaffold_11706
Species: RLO_Deltaproteobacteria_60_16 (50%)
4 2789 bp 56.22 7.15 86.27
PLM3-1_50_b2_sep16_scaffold_5944
Class: Deltaproteobacteria (85.71%)
7 6701 bp 56.10 7.14 95.63
PLM3-1_50_b2_sep16_scaffold_33086
Class: Deltaproteobacteria (85.71%)
7 3805 bp 52.46 7.14 88.30
PLM3-1_50_b2_sep16_scaffold_11979
Species: RLO_Deltaproteobacteria_57_22 (60%)
5 2757 bp 56.91 7.13 93.04
PLM3-1_50_b2_sep16_scaffold_13217
Phylum: Verrucomicrobia (50%)
6 5641 bp 56.32 7.13 88.39
PLM3-1_50_b2_sep16_scaffold_13694
Domain: Bacteria (100%)
5 4380 bp 55.53 7.12 82.12
PLM3-1_50_b2_sep16_scaffold_7140
Domain: Bacteria (80%)
5 3644 bp 52.50 7.12 82.74
PLM3-1_50_b2_sep16_scaffold_7952
Species: RLO_Deltaproteobacteria_60_19 (100%)
2 3437 bp 49.99 7.11 90.86
PLM3-1_50_b2_sep16_scaffold_4860
Domain: Bacteria (66.67%)
3 4449 bp 54.96 7.11 85.03
PLM3-1_50_b2_sep16_scaffold_9434
Species: RLO_Deltaproteobacteria_60_19 (60%)
5 4305 bp 54.31 7.11 87.60
PLM3-1_50_b2_sep16_scaffold_22036
Class: Deltaproteobacteria (66.67%)
3 3381 bp 51.43 7.10 63.71
PLM3-1_50_b2_sep16_scaffold_11876
Species: RLO_Deltaproteobacteria_60_19 (60%)
5 2767 bp 52.22 7.10 97.36
PLM3-1_50_b2_sep16_scaffold_9477
Species: RLO_Deltaproteobacteria_60_19 (50%)
4 3916 bp 53.83 7.09 83.27
PLM3-1_50_b2_sep16_scaffold_22857
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 2537 bp 56.48 7.09 100.87
PLM3-1_50_b2_sep16_scaffold_16733
Class: Deltaproteobacteria (100%)
5 3984 bp 53.19 7.08 93.98
PLM3-1_50_b2_sep16_scaffold_6315
Class: Deltaproteobacteria (53.85%)
13 9477 bp 54.31 7.08 88.16
Displaying items 301-350 of 593 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.