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PLM3-1_50_b1_sep16_scaffold_479

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_479_1
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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176..952
DNA (777bp) protein (259aa)
Transcriptional regulator, LuxR family Tax=Frankia sp. EUN1f RepID=D3CTN1_9ACTO
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:EFC85921.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
LuxR family transcriptional regulator
PLM3-1_50_b1_sep16_scaffold_479_2
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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1234..3117
DNA (1884bp) protein (628aa)
Na(+)/H(+) antiporter NhaA Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BFK3_STRRD
sodium/proton antiporter
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3-1_50_b1_sep16_scaffold_479_3
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(3338..3658)
DNA (321bp) protein (107aa)
Zinc finger UBP-type protein Tax=Patulibacter medicamentivorans RepID=H0EAF9_9ACTN
Zinc finger UBP-type protein {ECO:0000313|EMBL:EHN09286.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_479_4
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(3655..5223)
DNA (1569bp) protein (523aa)
Cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F9C1_CONWI
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ADB49088.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3-1_50_b1_sep16_scaffold_479_5
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(5277..5396)
DNA (120bp) protein (40aa)
hypothetical protein Tax=Streptomyces sp. R1-NS-10 RepID=UPI000378C989
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF69425.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces vietnamensis.;"
PLM3-1_50_b1_sep16_scaffold_479_6
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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5540..6706
DNA (1167bp) protein (389aa)
peptidase M50 Tax=Micromonospora sp. CNB394 RepID=UPI0003689805
peptidase m50
Membrane protein {ECO:0000313|EMBL:EWM68230.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
PLM3-1_50_b1_sep16_scaffold_479_7
unknown

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6754..7359
DNA (606bp) protein (202aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_479_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7878..8537
DNA (660bp) protein (220aa)
hypothetical protein Tax=Roseomonas sp. B5 RepID=UPI0003198041
Haloacid dehalogenase {ECO:0000313|EMBL:EIL87621.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
HAD family hydrolase
PLM3-1_50_b1_sep16_scaffold_479_9
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8574..8972
DNA (399bp) protein (133aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BAU3_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ91707.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3-1_50_b1_sep16_scaffold_479_10
Enterobacter sp. 35669, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9060..9755)
DNA (696bp) protein (232aa)
Transporter Tax=Serratia marcescens EGD-HP20 RepID=U1VV56_SERMA
Transporter {ECO:0000313|EMBL:KJN33504.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35669.;"
extracellular serine protease
PLM3-1_50_b1_sep16_scaffold_479_11
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(10932..11093)
DNA (162bp) protein (54aa)
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_50_b1_sep16_scaffold_479_12
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(11308..12201)
DNA (894bp) protein (298aa)
DSBA oxidoreductase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZC8_CONWI
DSBA oxidoreductase
DSBA oxidoreductase {ECO:0000313|EMBL:ADB51893.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3-1_50_b1_sep16_scaffold_479_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

12577..14181
DNA (1605bp) protein (535aa)
DNA polymerase III, subunits gamma and tau Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FFA6_CONWI
DNA polymerase III, subunit gamma and tau
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_479_14
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

14190..14507
DNA (318bp) protein (106aa)
Nucleoid-associated protein Cwoe_5292 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FFA5_CONWI
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_479_15
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

14551..15141
DNA (591bp) protein (197aa)
Recombination protein RecR Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=RECR_RUBXD
DNA replication and repair protein RecR
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3-1_50_b1_sep16_scaffold_479_16
Dehalogenimonas lykanthroporepellens, Dehalogenimonas, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

15510..16451
DNA (942bp) protein (314aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalogenimonas.;" source="Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061; / BL-DC-9).;"
Aspartate-semialdehyde dehydrogenase Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8JZR7_DEHLB
PLM3-1_50_b1_sep16_scaffold_479_17
Candidatus Korarchaeum cryptofilum, Candidatus Korarchaeum, Korarchaeota, Archaea

Not on your lists

comp(16454..17080)
DNA (627bp) protein (209aa)
GCN5-related N-acetyltransferase Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L4T2_KORCO
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACB07461.1}; species="Archaea; Korarchaeota; Candidatus Korarchaeum.;" source="Korarchaeum cryptofilum (strain OPF8).;"
PLM3-1_50_b1_sep16_scaffold_479_18
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17077..17898)
DNA (822bp) protein (274aa)
hypothetical protein Tax=Microbulbifer variabilis RepID=UPI000360709F
Metallophosphoesterase {ECO:0000313|EMBL:EYF00943.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
metallophosphoesterase
PLM3-1_50_b1_sep16_scaffold_479_19
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(17961..18143)
DNA (183bp) protein (61aa)
hypothetical protein Tax=Synechococcus sp. PCC 7336 RepID=UPI000345A009
succinate dehydrogenase chain C
Tax=RBG_16_Actinobacteria_68_12_curated
Displaying 19 items

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