ggKbase home page

PLM1_30_b1_sep16_scaffold_4932_3

Organism: PLM1_30_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 48 / 55 MC: 6 BSCG 48 / 51 MC: 3 ASCG 13 / 38 MC: 1
Location: comp(969..1760)

Top 3 Functional Annotations

Value Algorithm Source
Sigma factor Tax=Streptomyces bottropensis ATCC 25435 RepID=M3ECA1_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 46.1
  • Coverage: 254.0
  • Bit_score: 189
  • Evalue 3.00e-45
RNA polymerase sigma factor {ECO:0000313|EMBL:KKD08201.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. WM6386.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.9
  • Coverage: 263.0
  • Bit_score: 192
  • Evalue 6.40e-46
putative RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 46.0
  • Coverage: 224.0
  • Bit_score: 187
  • Evalue 3.20e-45

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Streptomyces sp. WM6386 → Streptomyces → Streptomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 792
GTGGTCCACGCGACCTGGTTGAGCCCTGCCGTCAACGACGTCCTTCCTGGTGATGACCTCGCCGTCGACCGTGTCGAAGGCTGGTTCCGGCAGTACGCCGCCACCCGCGATCCCGGCATCCGCGAGCAGATCATCGTCGCCTACCTGGGCCTGGCCGACCGGCTGGCCGAGCGGTACCGGGCCAGCCGCGGGGCCAGCCCCGAGGACCTCCGCCAGACGGCCCGGGTCGGGCTGGTGGCGGCCGTCGACCGCTACGACCCCGACTACGGCAACCCGTTCGTCCCCTACGCCGTGGCCTGTGTGGTCGGCGAGATCAAGCGCTACCTGCGCGACACCAGCTGGCGGGTCCACGTCTCGCGGCCGGTGAAGGAACGCTCCCTGCGCCTGTGCAAGGCCCTTGACGAGCTGCCCCCGACCCTCGGGCGCTCCCCGACCGTGGCCGAGCTCGCCGCCCACCTGGGGATCTCCCAGGAGGAGGCCGTTGAGGCCATCGAGGTCGTCCAGTCCCGCTCGGAGGTGTCGCTCGACCAGCAGCTCGGCGAGGAGGGCGACGCCACCCTCGGCGACCGCATGCCGGCCGCCCCGCCCCGGGAGGAGCTGGAGGACCTGCTCCTGCTGCCCGGCCTGGTCGACAGCCTGCCCGAGCAGGAGCGCGAGATCGTGGTCCTGCGCTTCTTCCACGACCTCGACCAGTACGACATCGCCGCCCGGGTCGGGTGCTCCCAGATGCACGTCTCGCGCCTGCTGCGCCGCGCCCTCGGCCGCATGCGCACCCAACTGCTGGTCAACTGA
PROTEIN sequence
Length: 264
VVHATWLSPAVNDVLPGDDLAVDRVEGWFRQYAATRDPGIREQIIVAYLGLADRLAERYRASRGASPEDLRQTARVGLVAAVDRYDPDYGNPFVPYAVACVVGEIKRYLRDTSWRVHVSRPVKERSLRLCKALDELPPTLGRSPTVAELAAHLGISQEEAVEAIEVVQSRSEVSLDQQLGEEGDATLGDRMPAAPPREELEDLLLLPGLVDSLPEQEREIVVLRFFHDLDQYDIAARVGCSQMHVSRLLRRALGRMRTQLLVN*