ggKbase home page

PLM1_30_b1_sep16_scaffold_10883_2

Organism: PLM1_30_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 48 / 55 MC: 6 BSCG 48 / 51 MC: 3 ASCG 13 / 38 MC: 1
Location: comp(440..1018)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CNV3_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 47.6
  • Coverage: 185.0
  • Bit_score: 139
  • Evalue 3.40e-30
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 47.6
  • Coverage: 185.0
  • Bit_score: 139
  • Evalue 9.50e-31
Tax=RBG_16_Actinobacteria_67_10_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 53.2
  • Coverage: 190.0
  • Bit_score: 170
  • Evalue 1.90e-39

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_Actinobacteria_67_10_curated → Acidimicrobiia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 579
ATGGAACCACAACCTGAGCTGCCGGCCCGCCTGGCCCTCGACCTGGACGGGTCGTTCGAGGAGCTGGTGCTGACCCACCAGCGGCTGGTCTACGGCCTGGCCCTGCGGGTCGTGGCCAACGCGGCCGACGCCGAGGAGGTCGCCCAGGACACCTTCGAGCGGGCCTACCACGCCCTGGCCAGCTACGACGCCGAGCGGGTGGCGGCCATGCGGCTGCGGCCCTGGCTGGCCCAGATCGCGCTCAACCTGGCCCGCAACCGGCTGCGGCGGCGGCCGCCGCCGGCCCGGCCGCTGGAGGACGGCGACGGCCAGGCGGTGGCGGTGGCCGCGCCCGCCGCCGCCCAGCCCGACCAGCTGGCCGAGCGCCGCCAGGAGTGGGAGCTGCTGGCCGAGCTCCTGGCCGGCCTGCCCCGGGGCTGGCGCGAGGCGGTGGTGCTGCGCCACGTCGAGGGCCTGCCGTATGCCGAGGTGGCCGAGGTCCTGGGCCGGCCGGTGGGCACGGTCAAGACCCATGCCCACCGCGGGGTGCGGCAGCTGCGGGCGACGCTGGAGGCTCGAGAGGAGCGGACACGACGATGA
PROTEIN sequence
Length: 193
MEPQPELPARLALDLDGSFEELVLTHQRLVYGLALRVVANAADAEEVAQDTFERAYHALASYDAERVAAMRLRPWLAQIALNLARNRLRRRPPPARPLEDGDGQAVAVAAPAAAQPDQLAERRQEWELLAELLAGLPRGWREAVVLRHVEGLPYAEVAEVLGRPVGTVKTHAHRGVRQLRATLEAREERTRR*