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PLM1_30_b1_sep16_scaffold_24691_3

Organism: PLM1_30_b1_sep16_Actinobacteridae_Actinomycetales_73_13

near complete RP 48 / 55 MC: 6 BSCG 48 / 51 MC: 3 ASCG 13 / 38 MC: 1
Location: comp(735..1319)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor Tax=Streptomyces viridochromogenes Tue57 RepID=L8PJU8_STRVR similarity UNIREF
DB: UNIREF100
  • Identity: 40.7
  • Coverage: 199.0
  • Bit_score: 145
  • Evalue 4.70e-32
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.0
  • Coverage: 191.0
  • Bit_score: 146
  • Evalue 3.90e-32
sigR; oxidative stress sigma factor similarity KEGG
DB: KEGG
  • Identity: 41.5
  • Coverage: 195.0
  • Bit_score: 143
  • Evalue 3.90e-32

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Taxonomy

Actinokineospora spheciospongiae → Actinokineospora → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 585
ATGTCAGCAACCACGGAGACCGTGGCCTCGATGCACGAGCGGTTCGAGGCCACGGCGCTGCCCCTGCACGACTCGATCTACCGGGCGAACCTGCGCATGACCGGCGACCCGGTGATGGCCCAGGACCTCACCCAGGAGACGTATCTCAGAGCCTTCCGCGCCTTCGACTCCTTCCAGGCCGGGACCAACTGCCGGGCCTGGATGCTGCAGATCTCCCACAACCTGTTCTGCCGCGACTACCGGGGGCGCAAGCGCATCACCTACCGGAGCGCGGCCGACGACGACGTCGACGTCCTGGCGCAGTTCCGGGCGGACGTTCCCAACCCGGAGGAGGAGGCGCTGCGCCAGCTCGACCGGGAGGCATTGCGACGGGCCATTTCCAAGCTGCCGGAGCCGTACCGTGTCGCGGTCACGCTCGTCGAGCTCCAGGGCCTTTCCTGCGAGGAGGCGGCGGCGGTGATGGGCACGCCCAAGGGCACCGTGCTTTCGCGACTTTTCCGGGCCCGGGAGCGGCTCCGCCGGCTGCTGCTGTCGGAGTTCGGCCGTTCCCGGACGCTTGTGCCCTCGTCCGCTCAGAATTCTTGA
PROTEIN sequence
Length: 195
MSATTETVASMHERFEATALPLHDSIYRANLRMTGDPVMAQDLTQETYLRAFRAFDSFQAGTNCRAWMLQISHNLFCRDYRGRKRITYRSAADDDVDVLAQFRADVPNPEEEALRQLDREALRRAISKLPEPYRVAVTLVELQGLSCEEAAAVMGTPKGTVLSRLFRARERLRRLLLSEFGRSRTLVPSSAQNS*