ggKbase home page

PLM2_5_b1_sep16_scaffold_166_32

Organism: PLM2_5_b1_sep16_Gemmatimonadetes_67_22

near complete RP 53 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 31668..32333

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor Tax=Microscilla marina ATCC 23134 RepID=A1ZW95_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 39.4
  • Coverage: 160.0
  • Bit_score: 106
  • Evalue 2.10e-20
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EAY25333.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.4
  • Coverage: 160.0
  • Bit_score: 106
  • Evalue 3.00e-20
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 35.7
  • Coverage: 171.0
  • Bit_score: 102
  • Evalue 1.10e-19

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Microscilla marina → Microscilla → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 666
ATGTCGCGCGCCTTCGCCGAGGAGCCGCACATCGTCGCCCCCACCGATTGGGAGTCCGCGTTCGACAGTTGTTACGTCGAGCTATGCGACTACGTGCTCCGGCTCGTCGGGTCGGCGGATACGGCTGAGGACATCGTCCAGGAGCTGTTCCTGCGGCTCTGGGACACGCGCGGACCTCGCGACGCCACCAGATTAACGCGCCCCTACTTGTTCGTGGCGGCGCGCAACTCCGCCCTCAAGTACCTGCGACATCAGCACGTAGCCGAAGCCTGGGTGGAGCGTGCCAGCCGCCAGCCACCCCCGGTTGCCGAGACGCCGGAAGACTTGTGCCTGGCCGAGGAGCTGGAGTCGGCGGTGCAGGACGCCATCCTGGAGCTCCCCACTCGCTGTCGCGAGATCTTCCTGCTGCGCCGGCGCGATCAACTGCCCTATGAGGAGATAGCCATCCGCGCCGGCGTGTCGCTGGGCACCGTGAAGTCCCAAATGTGGCGCGCCGCCGGTCTGCTCAGGAAGAAACTGGCCTTCATACTCGAGGCCCCTTCAGGGGTTGTTCCTATACACGCCCCATGGACCTCCTCCGCTTCATCGAGGGCGATTGCTCGCCCGCCGAAGCCGCGGCCCTCGCGACTTGGATCGCCGCGGATCCCGCGCGTGGAGCATTACTAG
PROTEIN sequence
Length: 222
MSRAFAEEPHIVAPTDWESAFDSCYVELCDYVLRLVGSADTAEDIVQELFLRLWDTRGPRDATRLTRPYLFVAARNSALKYLRHQHVAEAWVERASRQPPPVAETPEDLCLAEELESAVQDAILELPTRCREIFLLRRRDQLPYEEIAIRAGVSLGTVKSQMWRAAGLLRKKLAFILEAPSGVVPIHAPWTSSASSRAIARPPKPRPSRLGSPRIPRVEHY*