ggKbase home page

PLM2_5_b1_sep16_scaffold_22900_1

Organism: PLM2_5_b1_sep16_Acidobacteria_Holophagae_53_17

near complete RP 47 / 55 MC: 3 BSCG 45 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: 3..533

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIW0_CHLTF similarity UNIREF
DB: UNIREF100
  • Identity: 45.3
  • Coverage: 179.0
  • Bit_score: 150
  • Evalue 1.30e-33
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CDM66179.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.6
  • Coverage: 173.0
  • Bit_score: 209
  • Evalue 3.40e-51
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 47.2
  • Coverage: 176.0
  • Bit_score: 150
  • Evalue 2.90e-34

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pyrinomonas methylaliphatogenes → Pyrinomonas → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 531
GACGACCGTGAAGCTTTCGGCGAGATCGTGAGGAGGTGGGAGCGAAAGATCTTCGCTCTCTGCTTCGGCATGCTCGGCCGCGAGGATGACGCTGGGGATGCGGCACAGGAGACATTTATCGCTGCGTATCGTAATCTCGCAAGCTTCAGAGGCGAGGCCAAGGTTTCGTCGTGGCTTCACCGCATTGCAGTCAATCAATGCTTGACGACCAAGCGGCGGCAGCGGACGCGTGCCGAAGATCGAATCGACGAAGAGAGCGGGGCCGAGGAGCGGATATTTGTGGCACCGCTGAGTTTTTCTCCCGCAAGGACAACCGAGACTGCCGAGCGGACGAGCTTGATCCGAAACGCGGTCGGTGCCCTGCCGGTCGATCTCAGGCAGGTTGTGGTGATGAAGGAATTTGAAGAGATGACTTTCCAGGAGATCTCAGAAACGCTCGAATTGCCGCTAAGTACCGTAAAAAGCCGGCTATATACTGCCCTGAGGCAGTTAAAGATGAAACTCGAAAGAACACCGGTCGAGGTACTTTAG
PROTEIN sequence
Length: 177
DDREAFGEIVRRWERKIFALCFGMLGREDDAGDAAQETFIAAYRNLASFRGEAKVSSWLHRIAVNQCLTTKRRQRTRAEDRIDEESGAEERIFVAPLSFSPARTTETAERTSLIRNAVGALPVDLRQVVVMKEFEEMTFQEISETLELPLSTVKSRLYTALRQLKMKLERTPVEVL*