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PLM4_65_coex_sep16_Deltaproteobacteria_Geobacteraceae_55_13

PLM4_65cm_coex_sep2016_Geobacter_uraniireducens_55_13
In projects: PLM4_65cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Geobacter uraniireducens  →  Geobacter  →  Desulfuromonadales  →  Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 1-50 of 694 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_65_coex_sep16_scaffold_87369 4 2681 bp 47.74 5.48 49.24
PLM4_65_coex_sep16_scaffold_58798
Class: Deltaproteobacteria (71.43%)
7 3544 bp 45.17 9.35 50.28
PLM4_65_coex_sep16_scaffold_4418
Class: Deltaproteobacteria (60%)
10 8328 bp 55.52 12.59 51.48
PLM4_65_coex_sep16_scaffold_62263
Species: Geobacter uraniireducens (66.67%)
3 2563 bp 52.44 8.43 52.44
PLM4_65_coex_sep16_scaffold_38284
Class: Deltaproteobacteria (50%)
4 3363 bp 53.29 6.38 56.11
PLM4_65_coex_sep16_scaffold_53020
Species: Geobacter pickeringii (50%)
2 2693 bp 49.24 8.41 56.59
PLM4_65_coex_sep16_scaffold_29994
Domain: Bacteria (80%)
5 2745 bp 51.07 4.86 62.30
PLM4_65_coex_sep16_scaffold_69344
Species: Geobacter uraniireducens (50%)
6 2949 bp 49.07 12.87 62.67
PLM4_65_coex_sep16_scaffold_23020 6 3205 bp 48.30 13.01 64.40
PLM4_65_coex_sep16_scaffold_58195
Species: CG_Delta_01 (50%)
2 2969 bp 60.96 6.52 64.77
PLM4_65_coex_sep16_scaffold_26664
Class: Deltaproteobacteria (66.67%)
3 2939 bp 51.07 5.92 65.63
PLM4_65_coex_sep16_scaffold_21116
Genus: Geobacter (57.14%)
7 6568 bp 49.00 9.11 65.94
PLM4_65_coex_sep16_scaffold_2730
Species: Geobacter uraniireducens (54.55%)
11 10854 bp 49.12 15.82 66.01
PLM4_65_coex_sep16_scaffold_45986
Phylum: Proteobacteria (57.14%)
7 4870 bp 47.89 12.81 66.16
PLM4_65_coex_sep16_scaffold_33630
Species: Geobacter uraniireducens (100%)
3 2965 bp 51.26 11.74 66.78
PLM4_65_coex_sep16_scaffold_5063
Class: Deltaproteobacteria (75%)
8 7709 bp 52.12 14.15 66.86
PLM4_65_coex_sep16_scaffold_95496
Genus: Geobacter (50%)
4 2520 bp 50.95 5.89 66.90
PLM4_65_coex_sep16_scaffold_19349
Class: Deltaproteobacteria (66.67%)
3 3537 bp 57.87 11.83 67.51
PLM4_65_coex_sep16_scaffold_31879
Genus: Geobacter (66.67%)
6 2888 bp 51.07 7.74 68.25
PLM4_65_coex_sep16_scaffold_49875
Species: Geobacter uraniireducens (50%)
6 3111 bp 49.86 13.69 68.27
PLM4_65_coex_sep16_scaffold_12293
Genus: Geobacter (50%)
6 4617 bp 50.88 9.26 68.51
PLM4_65_coex_sep16_scaffold_21616
Genus: Geobacter (55.56%)
9 5905 bp 49.92 7.87 68.59
PLM4_65_coex_sep16_scaffold_9205
Class: Deltaproteobacteria (57.14%)
7 5460 bp 56.12 12.97 68.96
PLM4_65_coex_sep16_scaffold_21600
Species: Geobacter uraniireducens (100%)
3 3321 bp 54.11 10.52 69.11
PLM4_65_coex_sep16_scaffold_28617
Species: Geobacter uraniireducens (100%)
5 2822 bp 54.08 10.47 69.21
PLM4_65_coex_sep16_scaffold_11889
Genus: Geobacter (55.56%)
9 4708 bp 52.02 9.56 69.46
PLM4_65_coex_sep16_scaffold_27503
Species: Geobacter uraniireducens (60%)
5 2887 bp 52.75 5.98 70.56
PLM4_65_coex_sep16_scaffold_26792
Genus: Geobacter (50%)
4 2931 bp 59.16 8.19 71.03
PLM4_65_coex_sep16_scaffold_10520
Species: Geobacter uraniireducens (66.67%)
9 5890 bp 53.17 8.61 71.15
PLM4_65_coex_sep16_scaffold_22273
Species: Geobacter uraniireducens (75%)
4 3263 bp 53.05 8.46 71.25
PLM4_65_coex_sep16_scaffold_11639
Class: Deltaproteobacteria (57.14%)
7 5305 bp 52.59 7.97 71.59
PLM4_65_coex_sep16_scaffold_17510
Class: Deltaproteobacteria (50%)
8 3751 bp 54.25 8.48 71.63
PLM4_65_coex_sep16_scaffold_37281
Species: Geobacter uraniireducens (80%)
5 3784 bp 52.51 9.67 72.25
PLM4_65_coex_sep16_scaffold_20085
Genus: Geobacter (66.67%)
6 3465 bp 57.29 8.66 72.38
PLM4_65_coex_sep16_scaffold_21921
Genus: Geobacter (60%)
5 3294 bp 56.34 8.06 72.40
PLM4_65_coex_sep16_scaffold_94742
Species: Geobacter uraniireducens (50%)
2 2669 bp 58.67 7.53 72.50
PLM4_65_coex_sep16_scaffold_21258
Species: GWC2_Pelobacteraceae_58_13_curated (66.67%)
3 3352 bp 54.03 7.07 72.67
PLM4_65_coex_sep16_scaffold_12365
Genus: Geobacter (50%)
4 4600 bp 50.28 10.70 73.11
PLM4_65_coex_sep16_scaffold_16540
Class: Deltaproteobacteria (50%)
8 4783 bp 46.83 15.34 73.13
PLM4_65_coex_sep16_scaffold_2512
Class: Deltaproteobacteria (66.67%)
15 12909 bp 56.09 17.14 73.16
PLM4_65_coex_sep16_scaffold_4565
Class: Deltaproteobacteria (55.56%)
9 8187 bp 46.21 12.57 73.36
PLM4_65_coex_sep16_scaffold_5790
Class: Deltaproteobacteria (52.94%)
17 8229 bp 52.59 14.16 73.90
PLM4_65_coex_sep16_scaffold_16811
Phylum: Proteobacteria (50%)
12 7260 bp 42.40 11.12 74.96
PLM4_65_coex_sep16_scaffold_24832
Species: Geobacter uraniireducens (100%)
2 3062 bp 54.64 16.07 75.24
PLM4_65_coex_sep16_scaffold_20716
Species: Geobacter uraniireducens (100%)
5 4020 bp 54.58 13.99 75.30
PLM4_65_coex_sep16_scaffold_46971
Species: Geobacter uraniireducens (75%)
4 2582 bp 55.34 9.47 75.41
PLM4_65_coex_sep16_scaffold_4087
Species: Geobacter uraniireducens (50%)
12 8716 bp 53.11 17.35 75.45
PLM4_65_coex_sep16_scaffold_14229
Class: Deltaproteobacteria (83.33%)
6 4227 bp 55.22 11.60 75.51
PLM4_65_coex_sep16_scaffold_6064
Class: Deltaproteobacteria (88.89%)
9 7828 bp 55.88 12.09 75.54
PLM4_65_coex_sep16_scaffold_24005
Genus: Geobacter (57.14%)
7 3124 bp 47.76 8.07 75.74
Displaying items 1-50 of 694 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.