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PLM4_65_coex_sep16_Deltaproteobacteria_Geobacteraceae_55_13

PLM4_65cm_coex_sep2016_Geobacter_uraniireducens_55_13
In projects: PLM4_65cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Geobacter uraniireducens  →  Geobacter  →  Desulfuromonadales  →  Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 1-50 of 694 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_65_coex_sep16_scaffold_20213
Phylum: Proteobacteria (75%)
4 3452 bp 51.13 4.82 101.16
PLM4_65_coex_sep16_scaffold_114542
Species: Geobacter uraniireducens (60%)
5 2570 bp 49.73 7.18 100.86
PLM4_65_coex_sep16_scaffold_10336
Class: Deltaproteobacteria (66.67%)
6 5114 bp 55.12 5.40 100.43
PLM4_65_coex_sep16_scaffold_32469
Species: Geobacter uraniireducens (75%)
4 3342 bp 61.34 8.93 100.36
PLM4_65_coex_sep16_scaffold_19869
Species: Geobacter daltonii (50%)
4 3484 bp 57.09 6.37 100.23
PLM4_65_coex_sep16_scaffold_11155
Species: GWA2_Rokubacteria_70_23_curated (50%)
2 5343 bp 62.44 17.13 100.06
PLM4_65_coex_sep16_scaffold_76788
Species: Geobacter uraniireducens (66.67%)
3 2933 bp 51.48 6.85 100.03
PLM4_65_coex_sep16_scaffold_33117
Species: Geobacter uraniireducens (100%)
1 2594 bp 56.17 14.98 99.92
PLM4_65_coex_sep16_scaffold_117763
Species: GWC2_Geobacteraceae_58_44_curated (50%)
2 3281 bp 56.14 5.35 99.76
PLM4_65_coex_sep16_scaffold_25402
Species: Geobacter daltonii (50%)
2 3021 bp 49.22 7.60 99.50
PLM4_65_coex_sep16_scaffold_20309
Species: GWC2_Geobacteraceae_58_44_curated (66.67%)
3 4891 bp 58.72 6.93 99.43
PLM4_65_coex_sep16_scaffold_22535
Species: Geobacter sp. M18 (50%)
2 3242 bp 59.41 10.13 99.38
PLM4_65_coex_sep16_scaffold_25798
Species: Geobacter uraniireducens (66.67%)
3 2995 bp 64.61 13.42 99.27
PLM4_65_coex_sep16_scaffold_24256
Phylum: Proteobacteria (66.67%)
3 3600 bp 62.19 8.04 99.25
PLM4_65_coex_sep16_scaffold_21188
Genus: Geobacter (66.67%)
3 3358 bp 57.03 10.10 99.17
PLM4_65_coex_sep16_scaffold_31024
Species: Geobacter pickeringii (50%)
2 2693 bp 58.56 12.53 99.15
PLM4_65_coex_sep16_scaffold_31392
Species: Geobacter pickeringii (50%)
2 2675 bp 58.69 9.87 99.14
PLM4_65_coex_sep16_scaffold_13742
Species: Geobacter uraniireducens (100%)
3 4320 bp 63.68 14.58 99.10
PLM4_65_coex_sep16_scaffold_17610
Species: Geobacter uraniireducens (100%)
3 3740 bp 54.92 14.00 98.82
PLM4_65_coex_sep16_scaffold_18501
Species: Geobacter pickeringii (50%)
4 3634 bp 59.19 9.58 98.73
PLM4_65_coex_sep16_scaffold_28338
Species: Geobacter uraniireducens (100%)
7 5050 bp 49.84 14.38 98.73
PLM4_65_coex_sep16_scaffold_5891
Species: Geobacter uraniireducens (100%)
2 7056 bp 60.71 9.99 98.72
PLM4_65_coex_sep16_scaffold_21453
Species: Geobacter uraniireducens (100%)
3 3334 bp 59.69 13.27 98.62
PLM4_65_coex_sep16_scaffold_21706
Species: Geobacter uraniireducens (100%)
3 3313 bp 52.61 12.54 98.61
PLM4_65_coex_sep16_scaffold_13881
Species: Geobacter uraniireducens (100%)
6 5374 bp 54.95 15.77 98.47
PLM4_65_coex_sep16_scaffold_8749
Species: Geobacter uraniireducens (83.33%)
6 6249 bp 58.81 10.68 98.46
PLM4_65_coex_sep16_scaffold_9965
Species: Geobacter uraniireducens (100%)
3 5217 bp 59.98 16.22 98.45
PLM4_65_coex_sep16_scaffold_13693
Species: Geobacter uraniireducens (83.33%)
6 4754 bp 60.71 14.99 98.44
PLM4_65_coex_sep16_scaffold_17798
Domain: Bacteria (100%)
5 5252 bp 51.45 4.86 98.31
PLM4_65_coex_sep16_scaffold_13224
Species: Geobacter uraniireducens (60%)
10 6721 bp 51.54 6.70 98.29
PLM4_65_coex_sep16_scaffold_22480
Species: Geobacter uraniireducens (100%)
2 5339 bp 57.73 6.35 98.28
PLM4_65_coex_sep16_scaffold_15793
Species: Geobacter uraniireducens (100%)
2 3978 bp 62.72 18.29 98.27
PLM4_65_coex_sep16_scaffold_22077
Species: Geobacter uraniireducens (100%)
5 3280 bp 60.06 10.47 98.23
PLM4_65_coex_sep16_scaffold_17773
Species: Geobacter uraniireducens (100%)
3 3721 bp 52.14 10.92 98.20
PLM4_65_coex_sep16_scaffold_9258
Species: Geobacter uraniireducens (100%)
5 5444 bp 49.91 8.82 98.14
PLM4_65_coex_sep16_scaffold_12155
Species: Geobacter uraniireducens (100%)
5 4648 bp 58.86 12.26 98.11
PLM4_65_coex_sep16_scaffold_33955
Species: Geobacter uraniireducens (100%)
2 2557 bp 53.81 9.62 97.97
PLM4_65_coex_sep16_scaffold_9234
Species: Geobacter uraniireducens (100%)
3 5451 bp 56.96 11.09 97.96
PLM4_65_coex_sep16_scaffold_1761
Species: Geobacter uraniireducens (80%)
5 13782 bp 66.20 15.05 97.95
PLM4_65_coex_sep16_scaffold_9381
Species: Geobacter uraniireducens (100%)
6 5409 bp 61.18 15.59 97.95
PLM4_65_coex_sep16_scaffold_32304
Class: Deltaproteobacteria (100%)
6 3485 bp 55.35 9.77 97.70
PLM4_65_coex_sep16_scaffold_7461
Species: Geobacter uraniireducens (100%)
7 6167 bp 47.24 12.09 97.63
PLM4_65_coex_sep16_scaffold_25116
Species: Geobacter sp. OR-1 (50%)
2 3040 bp 63.85 20.97 97.60
PLM4_65_coex_sep16_scaffold_3394
Species: Geobacter uraniireducens (100%)
10 12208 bp 58.63 13.56 97.56
PLM4_65_coex_sep16_scaffold_17301
Species: Geobacter uraniireducens (100%)
4 3778 bp 63.08 12.07 97.43
PLM4_65_coex_sep16_scaffold_20013
Species: Geobacter uraniireducens (100%)
3 3471 bp 60.27 16.25 97.41
PLM4_65_coex_sep16_scaffold_11188
Class: Deltaproteobacteria (100%)
3 4887 bp 55.41 21.06 97.36
PLM4_65_coex_sep16_scaffold_29894
Species: Geobacter uraniireducens (100%)
5 2751 bp 55.73 14.23 97.27
PLM4_65_coex_sep16_scaffold_16142
Species: Geobacter uraniireducens (100%)
5 3930 bp 59.92 10.08 97.25
PLM4_65_coex_sep16_scaffold_39099
Species: Geobacter metallireducens (75%)
4 3409 bp 46.44 4.62 97.24
Displaying items 1-50 of 694 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.