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PLM1_100_coex_sep16_Rokubacteria_71_11

PLM1_100cm_coex_sep2016_Rokubacteria_71_11
In projects: PLM1_100cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  rokubacteria_ggkbase

Consensus taxonomy: Rokubacteria  →  Bacteria

Displaying items 651-679 of 679 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM1_100_coex_sep16_scaffold_5340
Species: RLO_Rokubacteria_71_22 (71.43%)
7 5971 bp 71.76 11.00 81.24
PLM1_100_coex_sep16_scaffold_5204
Domain: Bacteria (50%)
4 3173 bp 68.36 7.33 81.22
PLM1_100_coex_sep16_scaffold_5126
Phylum: Rokubacteria (66.67%)
3 3195 bp 68.86 12.35 81.13
PLM1_100_coex_sep16_scaffold_2416
Phylum: Proteobacteria (57.14%)
7 4761 bp 64.65 8.92 81.03
PLM1_100_coex_sep16_scaffold_4676
Domain: Bacteria (80%)
5 4832 bp 66.83 8.38 80.90
PLM1_100_coex_sep16_scaffold_3453
Phylum: Rokubacteria (80%)
10 7965 bp 71.49 11.05 80.57
PLM1_100_coex_sep16_scaffold_3022
Phylum: Proteobacteria (57.14%)
7 5580 bp 66.33 10.62 80.32
PLM1_100_coex_sep16_scaffold_7141
Species: R_Rokubacteria_73_56 (50%)
6 6015 bp 70.97 11.25 80.25
PLM1_100_coex_sep16_scaffold_3150
Species: R_Rokubacteria_73_56 (50%)
2 4128 bp 66.13 12.79 80.01
PLM1_100_coex_sep16_scaffold_15925
Domain: Bacteria (57.14%)
7 3055 bp 70.87 9.72 79.90
PLM1_100_coex_sep16_scaffold_15544
Phylum: Rokubacteria (80%)
5 2976 bp 69.79 9.63 79.64
PLM1_100_coex_sep16_scaffold_4359
Phylum: Proteobacteria (55.56%)
9 5712 bp 63.87 10.08 79.20
PLM1_100_coex_sep16_scaffold_21057
Domain: Bacteria (57.14%)
7 4086 bp 72.08 10.46 78.41
PLM1_100_coex_sep16_scaffold_5810
Domain: Bacteria (60%)
5 4702 bp 68.25 16.46 77.39
PLM1_100_coex_sep16_scaffold_8406
Species: R_Rokubacteria_73_56 (75%)
4 3768 bp 69.08 9.47 77.39
PLM1_100_coex_sep16_scaffold_3188
Domain: Bacteria (71.43%)
7 6596 bp 65.83 11.69 76.86
PLM1_100_coex_sep16_scaffold_4130
Domain: Bacteria (80%)
5 4660 bp 65.73 7.02 76.03
PLM1_100_coex_sep16_scaffold_12308
Domain: Bacteria (85.71%)
7 3445 bp 64.76 9.06 73.50
PLM1_100_coex_sep16_scaffold_6006
Domain: Bacteria (66.67%)
3 3908 bp 70.16 10.21 72.85
PLM1_100_coex_sep16_scaffold_12497
Phylum: Rokubacteria (100%)
4 3012 bp 71.58 9.06 71.81
PLM1_100_coex_sep16_scaffold_5956
Phylum: Rokubacteria (50%)
6 5358 bp 69.34 10.36 71.67
PLM1_100_coex_sep16_scaffold_28745 3 3630 bp 66.47 10.50 70.08
PLM1_100_coex_sep16_scaffold_3726
Species: R_Rokubacteria_73_56 (50%)
6 3771 bp 71.81 7.72 69.74
PLM1_100_coex_sep16_scaffold_5906
Species: Candidatus Accumulibacter sp. SK-12 (50%)
2 2987 bp 67.99 8.34 69.40
PLM1_100_coex_sep16_scaffold_7859
Phylum: Proteobacteria (50%)
6 5691 bp 69.32 10.52 66.26
PLM1_100_coex_sep16_scaffold_6226
Domain: Bacteria (100%)
3 2912 bp 68.13 6.95 66.24
PLM1_100_coex_sep16_scaffold_7274
Domain: Bacteria (66.67%)
3 2690 bp 67.17 11.60 63.68
PLM1_100_coex_sep16_scaffold_8047
Species: R_Rokubacteria_73_56 (100%)
3 2557 bp 68.36 12.44 63.59
PLM1_100_coex_sep16_scaffold_13764 3 2757 bp 67.86 8.98 50.05
Displaying items 651-679 of 679 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.