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PLM1_100_coex_sep16_Rokubacteria_71_11

PLM1_100cm_coex_sep2016_Rokubacteria_71_11
In projects: PLM1_100cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  rokubacteria_ggkbase

Consensus taxonomy: Rokubacteria  →  Bacteria

Displaying items 401-450 of 679 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM1_100_coex_sep16_scaffold_5212
Class: Deltaproteobacteria (50%)
4 4675 bp 72.17 9.85 95.81
PLM1_100_coex_sep16_scaffold_8366
Order: Burkholderiales (100%)
3 2505 bp 69.30 12.04 95.81
PLM1_100_coex_sep16_scaffold_7425 6 2661 bp 72.19 9.98 95.83
PLM1_100_coex_sep16_scaffold_356
Species: R_Rokubacteria_73_56 (50%)
16 13908 bp 71.43 11.12 95.84
PLM1_100_coex_sep16_scaffold_4027
Phylum: Proteobacteria (60%)
5 3620 bp 72.62 10.07 95.88
PLM1_100_coex_sep16_scaffold_5181
Phylum: Rokubacteria (60%)
5 4473 bp 70.15 11.10 95.91
PLM1_100_coex_sep16_scaffold_4817
Phylum: Rokubacteria (100%)
3 4042 bp 71.97 9.20 95.97
PLM1_100_coex_sep16_scaffold_3404
Species: RLO_Rokubacteria_71_22 (100%)
2 3953 bp 66.28 15.82 96.00
PLM1_100_coex_sep16_scaffold_2565
Phylum: Rokubacteria (60%)
5 4609 bp 73.03 10.45 96.01
PLM1_100_coex_sep16_scaffold_3665
Domain: Bacteria (60%)
5 3802 bp 68.12 9.31 96.03
PLM1_100_coex_sep16_scaffold_1783
Phylum: Rokubacteria (71.43%)
7 7158 bp 71.49 10.10 96.06
PLM1_100_coex_sep16_scaffold_3724
Class: Deltaproteobacteria (50%)
4 4455 bp 70.12 11.85 96.09
PLM1_100_coex_sep16_scaffold_7351
Domain: Bacteria (71.43%)
7 4108 bp 73.49 9.27 96.11
PLM1_100_coex_sep16_scaffold_5313
Phylum: Rokubacteria (50%)
6 3146 bp 70.95 11.01 96.12
PLM1_100_coex_sep16_scaffold_1750
Domain: Bacteria (100%)
6 5682 bp 71.84 11.03 96.15
PLM1_100_coex_sep16_scaffold_760
Phylum: Proteobacteria (53.85%)
13 9045 bp 68.19 12.06 96.15
PLM1_100_coex_sep16_scaffold_3264
Species: RLO_Rokubacteria_71_22 (62.5%)
8 7466 bp 73.36 10.73 96.16
PLM1_100_coex_sep16_scaffold_646
Phylum: Proteobacteria (54.55%)
11 9998 bp 70.19 11.01 96.17
PLM1_100_coex_sep16_scaffold_44682
Species: GWA2_Rokubacteria_70_23_curated (66.67%)
3 2745 bp 66.89 8.63 96.17
PLM1_100_coex_sep16_scaffold_1680
Domain: Bacteria (100%)
5 5804 bp 71.05 10.52 96.19
PLM1_100_coex_sep16_scaffold_2601
Domain: Bacteria (100%)
3 4578 bp 70.88 10.65 96.20
PLM1_100_coex_sep16_scaffold_3509
Species: CSP1_6_Rokubacteria (75%)
4 3897 bp 69.64 10.32 96.23
PLM1_100_coex_sep16_scaffold_6757
Species: RLO_Rokubacteria_71_22 (50%)
4 2793 bp 70.14 8.65 96.24
PLM1_100_coex_sep16_scaffold_1977
Phylum: Rokubacteria (80%)
10 8120 bp 72.01 11.58 96.24
PLM1_100_coex_sep16_scaffold_3211
Domain: Bacteria (100%)
5 6736 bp 71.42 11.11 96.24
PLM1_100_coex_sep16_scaffold_4961
Phylum: Rokubacteria (75%)
4 5052 bp 73.36 9.77 96.26
PLM1_100_coex_sep16_scaffold_7253
Domain: Bacteria (66.67%)
6 4444 bp 66.97 9.69 96.26
PLM1_100_coex_sep16_scaffold_3436
Species: Candidatus Entotheonella sp. TSY1 (50%)
4 3936 bp 69.39 11.66 96.27
PLM1_100_coex_sep16_scaffold_1259
Phylum: Rokubacteria (77.78%)
9 6793 bp 72.31 9.69 96.28
PLM1_100_coex_sep16_scaffold_4606
Species: GWA2_Rokubacteria_73_35_curated (57.14%)
7 5677 bp 69.91 9.49 96.28
PLM1_100_coex_sep16_scaffold_1090
Domain: Bacteria (100%)
15 15672 bp 71.82 11.67 96.31
PLM1_100_coex_sep16_scaffold_2931
Domain: Bacteria (100%)
6 6180 bp 70.29 11.99 96.31
PLM1_100_coex_sep16_scaffold_3160
Species: R_Rokubacteria_73_56 (50%)
10 4123 bp 66.24 13.02 96.31
PLM1_100_coex_sep16_scaffold_6470
Species: RLO_Rokubacteria_71_22 (66.67%)
3 2856 bp 74.54 13.18 96.32
PLM1_100_coex_sep16_scaffold_11561
Phylum: Rokubacteria (50%)
4 4335 bp 71.76 9.31 96.33
PLM1_100_coex_sep16_scaffold_3322
Species: GWA2_Rokubacteria_70_23_curated (50%)
4 4004 bp 71.00 12.33 96.35
PLM1_100_coex_sep16_scaffold_6359
Phylum: Proteobacteria (50%)
4 2880 bp 72.29 8.65 96.35
PLM1_100_coex_sep16_scaffold_4258
Species: R_Rokubacteria_71_18 (100%)
4 3521 bp 69.92 11.29 96.36
PLM1_100_coex_sep16_scaffold_3616
Species: GWA2_Rokubacteria_73_35_curated (60%)
5 3832 bp 69.99 10.26 96.37
PLM1_100_coex_sep16_scaffold_1030
Phylum: Rokubacteria (57.14%)
7 8850 bp 75.45 10.53 96.37
PLM1_100_coex_sep16_scaffold_2811
Species: RLO_Rokubacteria_71_22 (50%)
4 4388 bp 72.47 10.05 96.40
PLM1_100_coex_sep16_scaffold_251
Phylum: Rokubacteria (88.89%)
18 22014 bp 71.18 12.14 96.40
PLM1_100_coex_sep16_scaffold_1134
Domain: Bacteria (100%)
7 7171 bp 69.39 11.48 96.43
PLM1_100_coex_sep16_scaffold_4038
Domain: Bacteria (100%)
9 6483 bp 70.91 10.74 96.48
PLM1_100_coex_sep16_scaffold_2651
Species: Calothrix parietina (50%)
2 4527 bp 71.75 12.82 96.49
PLM1_100_coex_sep16_scaffold_1355
Phylum: Rokubacteria (75%)
8 8189 bp 71.16 10.15 96.50
PLM1_100_coex_sep16_scaffold_277
Species: GWA2_Rokubacteria_73_35_curated (50%)
18 16002 bp 71.33 11.07 96.51
PLM1_100_coex_sep16_scaffold_2108
Phylum: Rokubacteria (85.71%)
14 10826 bp 69.90 10.78 96.52
PLM1_100_coex_sep16_scaffold_2608
Domain: Bacteria (80%)
5 5756 bp 71.47 10.29 96.53
PLM1_100_coex_sep16_scaffold_373
Phylum: Rokubacteria (93.33%)
15 16739 bp 70.99 12.04 96.53
Displaying items 401-450 of 679 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.